Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30512.Seq
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...    77   5e-15
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 36/61 (59%), Positives = 45/61 (73%)
 Frame = +1

Query: 73  KKRQISHKRXVTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
           KK + +    VTREYT+++H R+ G G KKRAPRAI EI+ FA  QM T D+RVDT+LNK
Sbjct: 7   KKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNK 66

Query: 253 F 255
           F
Sbjct: 67  F 67



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 31/59 (52%)
 Frame = +3

Query: 243 LKQILWSKGXXXXXXXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 419
           L + +WSKG                N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 64  LNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 31/59 (52%)
 Frame = +3

Query: 243 LKQILWSKGXXXXXXXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 419
           L + +WSKG                N+DEDSA KL+TL TYVP  +  GL   NVD+ +
Sbjct: 12  LNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 211 MGTPDIRVDTRLNKF 255
           M T D+RVDT+LNKF
Sbjct: 1   MKTNDVRVDTKLNKF 15


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 194 FRISLIALGARFLNPXP*SRLCKLTVYSRVTXRLWLICLFF 72
           + IS +A+   F+   P +      +  R   R+W++CLFF
Sbjct: 122 YLISFLAIRKCFVYFFPSTERTIFPILGRFYKRVWILCLFF 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,095,334
Number of Sequences: 27780
Number of extensions: 154926
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)