Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30512.Seq
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...    83   7e-17
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            81   3e-16
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            81   3e-16
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080...    27   7.9  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score = 83.4 bits (197), Expect = 7e-17
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = +1

Query: 103 VTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
           VTREYT+NLH+RLH   FKK+AP+AIKEIR FA K+MGT D+RVD +LNK
Sbjct: 12  VTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNK 61



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 159 KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILWSKGXXXXXXXXXXXXXXXXNDDEDSA 338
           K  PK+ +   K   K  G         L + +WSKG                NDDED+ 
Sbjct: 31  KKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAK 90

Query: 339 HKLFTLVTY--VPVASIKGLQTENVD 410
            + F+LVT   +P   + GL T+ ++
Sbjct: 91  EEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 36/50 (72%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 VTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
           VTREYT+NLH+RLH   FKK+AP AIKEIR FA K MGT D+RVD +LNK
Sbjct: 12  VTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNK 61



 Score = 36.7 bits (81), Expect = 0.007
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +3

Query: 159 KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILWSKGXXXXXXXXXXXXXXXXNDDEDSA 338
           K  P + +   K   K  G         L + +WSKG                NDDED+ 
Sbjct: 31  KKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAK 90

Query: 339 HKLFTLVTY--VPVASIKGLQTENVDASQ 419
            + F+LVT   +P   + GL T+ ++  +
Sbjct: 91  EEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = +1

Query: 103 VTREYTVNLHKRLHGXGFKKRAPRAIKEIRXFAXKQMGTPDIRVDTRLNK 252
           +TREYT+NLH+RLH   FKK+AP+AIKEIR FA K MGT D+RVD +LNK
Sbjct: 12  ITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK 61



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 159 KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILWSKGXXXXXXXXXXXXXXXXNDDEDSA 338
           K  PK+ +   K   K  G         L + +WSKG                NDDED+ 
Sbjct: 31  KKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAK 90

Query: 339 HKLFTLVTY--VPVASIKGLQTENVD 410
            + F+LVT   +P   + GL T+ ++
Sbjct: 91  EEFFSLVTVAEIPAEGLSGLGTKVIE 116


>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
           At5g37170, At2g05090
          Length = 566

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 126 FTQTTSWXWI*KACPKSNQRNPKXRXKTDGNSGHSSRHSLKQILW 260
           F   T W W    CPK N++    +  T  ++G   +  +K   W
Sbjct: 295 FAIDTDWGWFYFGCPKCNRKTELVKEST--STGKMVKTPMKPKFW 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,531,309
Number of Sequences: 28952
Number of extensions: 140327
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)