Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30511.Seq
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   2e-27
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.11 
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)            29   2.3  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  119 bits (286), Expect = 2e-27
 Identities = 55/63 (87%), Positives = 60/63 (95%)
 Frame = +2

Query: 257 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 436
           IRQAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQK
Sbjct: 45  IRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQK 104

Query: 437 SYR 445
           SYR
Sbjct: 105 SYR 107



 Score = 50.0 bits (114), Expect(2) = 6e-07
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +3

Query: 156 KLQEPILLLGKEKFSMVXIRXTVKGGGHVAQVY 254
           K++EPILLLGKE+F  V IR  VKGGGH +++Y
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIY 43



 Score = 20.6 bits (41), Expect(2) = 6e-07
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 30 QAVQVFGRK 56
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 WSCSTSLPIRQAIS-KALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 391
           W  +  L ++       ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 36  WDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
          Length = 263

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 84  KRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVKGGGHVAQ 248
           ++G+G++RV GR    +    + Y+L+ PI+L  K   + + I    +  GH+ Q
Sbjct: 86  QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQ 136


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 200 REFFLAEQKDRFLKFVLQQSGXNQ--VQWAP 114
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 92  SWNAACKRAPIGLG*XQTAAVQTSGTYPFARQGKILYG 205
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,741
Number of Sequences: 59808
Number of extensions: 351698
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)