Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30509.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.25 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.4  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 AGWRSNGFTCICLCTIGSAKWKARLHVHSC 436
           AG  SNG  C CL T  SAK + +    SC
Sbjct: 181 AGKASNGNKCCCLRTCSSAK-RPKFENSSC 209


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +3

Query: 45  RIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTC 161
           R+   KC F   Y+H + +  +   GS          TC
Sbjct: 230 RLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC 268


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 74   TELSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*T 214
            TE   P W      WW   T S   T      ++R   TR   TS T
Sbjct: 1028 TEHMHPDWTTKPSTWWSSTTTSPWWTTT---TTRRTTTTRPTTTSTT 1071


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 326 PCYSGHFAGWRSNGFTCIC 382
           PC +G     + N F CIC
Sbjct: 76  PCENGGTCVDKINAFQCIC 94


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 368 FTCICLCTIGSAKWKARLHVH 430
           + C+    +GSA   AR++V+
Sbjct: 489 YRCVASSKVGSADHSARINVY 509


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 352 LEVEWVYVHMFVYHWEC 402
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 352 LEVEWVYVHMFVYHWEC 402
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 352 LEVEWVYVHMFVYHWEC 402
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 352 LEVEWVYVHMFVYHWEC 402
           LE    +++MFV  W+C
Sbjct: 291 LEQSRYFIYMFVSVWKC 307


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 33  SNCGRIRTSKCRFSQSYRHLIGHERQRSGG 122
           S  GRI   KC         + H RQ  GG
Sbjct: 630 SGAGRITCEKCGNKIDTSLFVDHIRQCVGG 659


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,016
Number of Sequences: 336
Number of extensions: 3587
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)