Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30509.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 64 6e-11
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 51 6e-07
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical ... 28 5.1
Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical pr... 27 6.7
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 6.7
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 6.7
AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monoox... 27 6.7
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 6.7
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 6.7
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 27 6.7
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 6.7
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 64.1 bits (149), Expect = 6e-11
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHA 162
++V VHP V +VD + RR N + +GTL+G +KG ++VTNCF +P E
Sbjct: 5 LTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESN 64
Query: 163 DQVEAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLY 291
D +E + + + ++ + +E VGW+ ++ L+Y
Sbjct: 65 DDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIY 107
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 50.8 bits (116), Expect = 6e-07
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 177
V VHP+VL +VD + R + RV+G LLG+ K +++ N F VP E
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 178 ---ELNYAMDVYELNRRVNSSESIVGWW 252
+++Y +Y + +V + E IVGW+
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWY 128
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 131 TASACHTKNMPIKSKRNLITRWMFTS 208
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 118 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 17
PLL SCP+ C+ LC + P F+ K D
Sbjct: 44 PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76
>AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical
protein Y67H2A.6 protein.
Length = 426
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCF 138
V +HP+V+ Q+ + Y R +V G +LG + VE N F
Sbjct: 14 VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSF 61
>Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical
protein K08C7.5 protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 172 RLDRHVLCVARRSSWLLPPLLCRSCP 95
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 95 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 95 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 172 RLDRHVLCVARRSSWLLPPLLCRSCP 95
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 95 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 95 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2
Query: 380 CLCTIGSAKWKARLHVHSCRCHSH 451
C CT +W +H CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 26 FYFKLWTHTNVEMQILTELSAPYWARA 106
FY +W+ T V + LT YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,374,624
Number of Sequences: 27780
Number of extensions: 328301
Number of successful extensions: 802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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