Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30508.Seq
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 113 1e-25
11_01_0155 - 1287003-1287452 113 1e-25
07_03_0227 - 15398371-15398925 30 0.93
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 30 1.2
03_06_0097 - 31632238-31632525,31633386-31633769 30 1.2
11_06_0598 - 25391923-25393197 28 5.0
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 6.5
05_03_0424 - 13795721-13795900,13796134-13796202,13796260-137963... 27 8.7
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 27 8.7
>12_01_0152 - 1168928-1169377
Length = 149
Score = 113 bits (271), Expect = 1e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90 AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 100 bits (239), Expect = 8e-22
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +1
Query: 7 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 186
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 187 SMVXIRXTVKGGGHVAQVYAIRQ 255
+ +R V+GGG +Q+YAIRQ
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQ 89
>11_01_0155 - 1287003-1287452
Length = 149
Score = 113 bits (271), Expect = 1e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90 AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 100 bits (239), Expect = 8e-22
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +1
Query: 7 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 186
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 187 SMVXIRXTVKGGGHVAQVYAIRQ 255
+ +R V+GGG +Q+YAIRQ
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQ 89
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 157 VPEVCTAAVWXQPSPMGARLHAAFH--DHACNTQLRWRF 47
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVK 216
G++K + A + + G G VN + D P +L ++ + + TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 217 GGGHVAQVYAIR 252
GGG QV AIR
Sbjct: 354 GGGVSGQVGAIR 365
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 19 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---XPRLLQYKLQEPILLLGKEKFS 189
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFENSY 154
Query: 190 MVXIRXTVKGGGHVAQVYAI 249
V ++ V GGG Q AI
Sbjct: 155 DVFVK--VHGGGLSGQAQAI 172
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 415 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 263
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 111 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 25
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>05_03_0424 -
13795721-13795900,13796134-13796202,13796260-13796385,
13797224-13798166,13798263-13799248
Length = 767
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 222 WSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYD 344
WS S + + + AL+ Y+K + A + + D ++ D
Sbjct: 279 WSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKD 319
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 204 SDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLD 25
+D + E + E +FL+ Q + + +W +YT +S++ LA+ N L LD
Sbjct: 210 NDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAV-NAYTRLLARRLLD 268
Query: 24 GLDG 13
+G
Sbjct: 269 RPEG 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,112
Number of Sequences: 37544
Number of extensions: 300649
Number of successful extensions: 735
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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