Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30508.Seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   8e-26
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        34   0.077
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)            29   1.7  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   28   3.8  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   27   8.9  
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  27   8.9  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   27   8.9  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  113 bits (272), Expect = 8e-26
 Identities = 52/60 (86%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 48  AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107



 Score = 57.6 bits (133), Expect(2) = 3e-09
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +1

Query: 145 KLQEPILLLGKEKFSMVXIRXTVKGGGHVAQVYAIRQLFQR 267
           K++EPILLLGKE+F  V IR  VKGGGH +++YAIRQ   +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 20.6 bits (41), Expect(2) = 3e-09
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 19 QAVQVFGRK 45
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +3

Query: 237 SLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 380
           +++++T +   L AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 43  AVKHKTHVDTVL-AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
          Length = 263

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 73  KRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVKGGGHVAQVYAIR 252
           ++G+G++RV GR    +    + Y+L+ PI+L  K   + + I    +  GH+ Q   + 
Sbjct: 86  QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQESVLS 141

Query: 253 QL 258
            L
Sbjct: 142 SL 143


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 189 REFFLAEQKDRFLKFVLQQSGXNQ--VQWAP 103
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 222 WSCSTSLRYQTAISKA 269
           WSCSTS+R +T+I KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 81  SWNAACKRAPIGLG*XQTAAVQTSGTYPFARQGKILYG 194
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +2

Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSX*QSRVVVM*HKFTLSDSYF 262
           T   W+    +C +   R  SF S R    WL     +    + H F   DSYF
Sbjct: 491 TCKEWSMDRLECTTCGVRRHSFTSIRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 544


>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 378

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +2

Query: 101 TGAHWTWLXPDCCSTNFRNLSFCSARKNSLWLXSX*QSRVVVM*HKFTLSDSYF 262
           T   W     +C +   R  SF S+R    WL     +    + H F   DSYF
Sbjct: 289 TCKEWPMDRLECTTCGVRKHSFTSSRAFCDWLFGGSNAGYTCLAHNFKGYDSYF 342


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -2

Query: 252 SDSVNLCYMTTTLDCXSDXNHR-----EFFLAEQKDRFL 151
           S++  LCY+ T ++C  D  H+     E  LA++K + L
Sbjct: 582 SEAEKLCYIETRVECLMDMGHKCSTSTELSLADRKAKVL 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,425
Number of Sequences: 59808
Number of extensions: 320246
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)