Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30508.Seq
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 113 5e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 113 5e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 112 1e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 37 0.009
At1g43570.1 68414.m05001 hypothetical protein 31 0.34
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 5.5
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 27 5.5
At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55... 27 7.3
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi... 27 7.3
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 27 7.3
At3g24255.1 68416.m03045 expressed protein 27 7.3
At5g18480.1 68418.m02179 glycogenin glucosyltransferase (glycoge... 27 9.6
At4g11530.1 68417.m01850 protein kinase family protein contains ... 27 9.6
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 9.6
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 27 9.6
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 113 bits (273), Expect = 5e-26
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 106 bits (254), Expect = 1e-23
Identities = 46/85 (54%), Positives = 65/85 (76%)
Frame = +1
Query: 1 ARRXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKE 180
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 181 KFSMVXIRXTVKGGGHVAQVYAIRQ 255
+F+ V +R V GGGH +QVYAIRQ
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQ 86
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 113 bits (273), Expect = 5e-26
Identities = 51/60 (85%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 106 bits (255), Expect = 7e-24
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +1
Query: 1 ARRXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKE 180
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 181 KFSMVXIRXTVKGGGHVAQVYAIRQ 255
+F+ V +R V GGGH +QVYAIRQ
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQ 86
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 112 bits (270), Expect = 1e-25
Identities = 50/60 (83%), Positives = 58/60 (96%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
Score = 105 bits (252), Expect = 2e-23
Identities = 45/79 (56%), Positives = 63/79 (79%)
Frame = +1
Query: 19 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVX 198
++VQ FGRKKTATAV YCKRG GM+++NG P++L P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 199 IRXTVKGGGHVAQVYAIRQ 255
+R GGG+ ++VYAIRQ
Sbjct: 68 MRIRATGGGNTSRVYAIRQ 86
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 36.7 bits (81), Expect = 0.009
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVK 216
GR+K + A + + G G +VN + D+ P +L ++ L + I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 217 GGGHVAQVYAIR 252
GGG QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 376 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 269
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 225 SCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 356
SC R+Q + AL F+Q++ AS IL Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 169 LGKEKFSMVXIRXTVKGGGHVAQVYAIRQLFQ 264
+G E+ V I + GGGH A AIR F+
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98
>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 253
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 249 QTAISKALIAFYQK--YVDEASKKEIKDIL 332
++ + L+ FY K Y DE + EIKDIL
Sbjct: 99 ESVVHAKLLVFYMKKLYADEKFRYEIKDIL 128
>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 477
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 TSLRYQTAISKALIAFYQKYVDEAS-KKEIKDILVQYDRSLLVADPRRCEPKKF 392
++LR+ T +S A + Q ++ +KE+ VQ D S + RRC+P +F
Sbjct: 22 SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 160 ILLLGKEKFSMVXIRXTVKGGGHVAQVYAIRQLFQ 264
++ +G E+ V I + GGGH A AIR F+
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK 94
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 373 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 269
R G T++ LS+ R+ LIS S T FW A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176
>At5g18480.1 68418.m02179 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-1 from
Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730],
Homo sapiens [SP|P46976]; contains Pfam profile PF01501:
Glycosyl transferase family 8
Length = 537
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 252 TAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGG 398
T +K ++A V + SKK +K + ++ L+A+P + P +F G
Sbjct: 56 TGSTKDMVALVSDGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWG 104
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 80 VMECCV*TGAHWTWLXPDCCSTNFRNLSF 166
+ E C +TW PDCC + N+SF
Sbjct: 359 ISESCPNKTDAYTW--PDCCMVRYSNVSF 385
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +2
Query: 110 HWTWLXPDCCSTNFRNLSFCSARKNSLW 193
+W W DC F +L F +N W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 216 GWWSCSTSLRYQTAISKALIAFYQKYV 296
GWWS S Y +SKA F++KY+
Sbjct: 214 GWWSVWWSGTYSMVLSKAAF-FHKKYL 239
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,553,242
Number of Sequences: 28952
Number of extensions: 219186
Number of successful extensions: 577
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -