Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30507.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)                   30   1.7  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  30   2.3  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     29   4.0  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   29   4.0  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           29   5.3  
SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)                28   7.0  
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    28   7.0  
SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.0  
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)                   28   9.2  
SB_51641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_23487| Best HMM Match : Calcipressin (HMM E-Value=0)                28   9.2  
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)                   28   9.2  

>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
 Frame = +3

Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
           FKC  CG  L +KTY   Q     K  YC +H PK    +    L+N  +   + +    
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272

Query: 420 SNNYVNEQIRG-YIRNSHEPE-LSPIRATNGGASTRLQQGS 536
                 EQ RG Y   S +PE L  I      ++   Q GS
Sbjct: 273 QYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGS 313


>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = +1

Query: 175  FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
            F+ NE   QVDR G   +FTF      ++P  + N P R   I   GR+ K  +A   ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156

Query: 355  RSVRATWTTPQWASEALSTC 414
             ++   +   Q  +EA+  C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176


>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
           Y  NF+   CFRC      +   G + KD TFF  GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454


>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
          Length = 163

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
           Y  NF+   CFRC      +   G + KD TFF  GC
Sbjct: 6   YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
           QLL  H +R Q+ Q++  +Q+  Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +1

Query: 298 TITSIGRKTKKYTA----LATYQRSVRATWTTPQWASEALS-TCPKAITTSTNRSEDTSG 462
           T  ++   TK Y+A    +AT  +   AT  T   +++  S TCP   T +   S   + 
Sbjct: 356 TCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCYSVTCPTVATNTKGYSVMCAT 415

Query: 463 TAMSQNCLRSGRPTV 507
            A +  C R+ R TV
Sbjct: 416 VATNTKCYRAMRGTV 430


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +1

Query: 415 PKAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVREIRRQRPPH 594
           P +    + RS  +S +  S       RPT  RP  S   A   YP        RQ P H
Sbjct: 380 PGSAVGESGRSSRSSSSPPSAYSAEQERPTTSRP--SHTSATEYYP-------DRQAPGH 430

Query: 595 ST---RLKANRAPESLPSAE 645
            T       N APES P+A+
Sbjct: 431 RTPDRHTHNNHAPESYPAAQ 450


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 467  P*ARTVSDPGDQRWSVHASPARELSRDTPDYQYG 568
            P A  ++DP   RW V AS   +LS D P+++ G
Sbjct: 1162 PQANRIADPVSSRWGVDAS--LKLSADPPEFKPG 1193


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
 Frame = +2

Query: 398  KRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGDQRWSVHASPARELSRDTPDYQYGRFD 577
            K  Q   KQ ++   D    QE+P  +    P  ++ +  ++  +E    TPD++    D
Sbjct: 765  KHDQEQDKQ-VKDENDFDQKQEKPHQKH-DKPVQEQLNYSSTDKKEA---TPDHKEANLD 819

Query: 578  ASALHIAHALKQTELQKAYHRPREKPIDCYLD--RDEQTKLEMKHRQEEDDLYRKFSE 745
             + + +    +Q E  + YH     P +   D  RD+  +      QE   + +K  +
Sbjct: 820  ETRITVKPGQEQNEANQEYHNRGSDPQESISDLKRDKPNETRKNSDQELGKIRQKLGQ 877


>SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)
          Length = 196

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 674 RDEQTKLEMKHRQEEDDLYRKFSET 748
           RDE  ++  KH QE+D++  + +ET
Sbjct: 124 RDEYEQMSSKHNQEKDEIREELNET 148


>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 515 HASPARELSRDTPDYQYGRFDASALHIAHALKQTELQKAYHRPREKPI----DCYLDRDE 682
           HA   RE     P  +  R + +     HA  QTE +   H+P EK      DC + RD+
Sbjct: 334 HAQTERETVTHKPSKERSRTNRA--RNGHA--QTERETVTHKPSEKRSRTNRDCGVGRDD 389

Query: 683 QTKLEMK 703
            T +E++
Sbjct: 390 LTTIELQ 396


>SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 674 RDEQTKLEMKHRQEEDDLYRKFSET 748
           RDE  ++  KH QE+D++  + +ET
Sbjct: 124 RDEYEQMSSKHNQEKDEIREELNET 148


>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
          Length = 967

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
 Frame = +3

Query: 255  KCAVCGTKLTLKTYYNN--QHWTEDK------EVYCSSHVP 353
            KC VCGT+L L+ Y  +  Q ++ D+      +V C +HVP
Sbjct: 927  KCTVCGTQLLLQGYTKSHPQCFSIDRLDDGSLQVECQTHVP 967


>SB_51641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 566 GRFDASALHIA-HALKQTELQKAYHRPREKPIDCYLDRDEQTKLE-MKHRQEEDDLY 730
           G+ + SA+ +   A  Q  + K+  R   K  D   D DE+ K E +   +EED+++
Sbjct: 462 GKLNTSAMKLQLTAQSQVNVPKSRRRSTLKTADYLYDYDEEIKAEGVPGEEEEDEIF 518


>SB_23487| Best HMM Match : Calcipressin (HMM E-Value=0)
          Length = 422

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 515 HASPARELSRDTPDYQYGRFDASALHIAHALKQTELQKAYHRPRE 649
           H  PAR +    P  Q+G F    +H+ H   + E+QK YH P +
Sbjct: 374 HMFPARLVKVPMPTSQFGNFS---MHVPHG--KVEMQK-YHYPND 412


>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 267

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTA 468
           T T+    T  YT+  +Y  +   T +TP + S    TC  + T++T+ +  TS T+
Sbjct: 168 TSTTSYTSTTSYTSTTSYTPTPSYT-STPSYTSTTSYTCTTSYTSTTSYTCTTSYTS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,042,544
Number of Sequences: 59808
Number of extensions: 554212
Number of successful extensions: 1838
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)