Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30507.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    31   0.61 
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    31   0.61 
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    29   3.3  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    29   3.3  
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    29   4.3  
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    29   4.3  
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ...    28   7.6  
At1g58090.1 68414.m06583 F-box family protein contains F-box dom...    27   10.0 
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   10.0 

>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRSGR 498
            LRS +
Sbjct: 1616 LRSDK 1620


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +1

Query: 304  TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
            +SI ++T+  T+LA+   + +  +  P+ ASE +S  PKA   ST+  +  S    +   
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615

Query: 484  LRSGR 498
            LRS +
Sbjct: 1616 LRSDK 1620


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 463 TAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVREIRRQRPPHSTRLKANRAPESL-PS 639
           ++ SQ+       + ER R S+  +    P  P+R++    P  S RL   R PESL PS
Sbjct: 58  SSSSQSVAAKRAVSAERKRPSTPPSPT-SPSTPIRDLSIDLPASSRRLSTGRLPESLWPS 116

Query: 640 AER 648
             R
Sbjct: 117 TMR 119


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 463 TAMSQNCLRSGRPTVERPRVSSKGAIA*YP*LPVREIRRQRPPHSTRLKANRAPESL-PS 639
           ++ SQ+       + ER R S+  +    P  P+R++    P  S RL   R PESL PS
Sbjct: 58  SSSSQSVAAKRAVSAERKRPSTPPSPT-SPSTPIRDLSIDLPASSRRLSTGRLPESLWPS 116

Query: 640 AER 648
             R
Sbjct: 117 TMR 119


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 26/89 (29%), Positives = 40/89 (44%)
 Frame = +2

Query: 323 QRSILL*PRTKDRSGPLGQLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQP*ARTVSDPGDQ 502
           Q   LL  R + +     Q    HQ++ Q+ Q+Q  +Q+  Q+ HQ QP       P  Q
Sbjct: 112 QMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP-------PSQQ 164

Query: 503 RWSVHASPARELSRDTPDYQYGRFDASAL 589
           +    ++P  +  + TP  Q  R D S L
Sbjct: 165 Q-QQQSTPQHQ-QQPTPQQQPQRRDGSHL 191


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 443 DQRIHQEQP*ARTVSD------PGDQRWSVHASPARE 535
           D+   QE P + TVSD      PG  RWS++  PA+E
Sbjct: 610 DKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAKE 646


>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 345

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 258 CAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVP 353
           C +CG  + +  YY+ +    D ++YC+ + P
Sbjct: 83  CDLCGKSINVNLYYSCKICDFDVDLYCAKYPP 114


>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 371

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 373 WTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGRPT 504
           W   +W ++A +TC KAI    +R E +       +C   G+ T
Sbjct: 120 WRQTKWIAKAENTCGKAIGYDGSRPEKSYKIIGRSSCSWQGKVT 163


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
 Frame = +2

Query: 458 QEQP*ARTVSD------PGDQRWSVHASPARE 535
           QE P   TVSD      PG  RWS+++ PA+E
Sbjct: 613 QEFPENSTVSDLLRRAGPGSSRWSMYSIPAKE 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,007
Number of Sequences: 28952
Number of extensions: 371492
Number of successful extensions: 1109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)