Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30506.Seq
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 133 9e-32
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.73
SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.7
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.7
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 3.9
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3) 28 3.9
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 5.1
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 27 6.8
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.0
SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026) 27 9.0
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 133 bits (321), Expect = 9e-32
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = +3
Query: 15 MTNSKGYRXGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 194
MTN+KGYR GTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 195 TGRVYNVTAHALGVIVNKRV 254
TGRVYNVT ALGV+VNK+V
Sbjct: 483 TGRVYNVTKRALGVVVNKQV 502
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 326 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 475
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_58538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 30.3 bits (65), Expect = 0.96
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 180 VYHGKTGRVYNVTAHALGV-IVNKRVAEGLYRSASISVLSMSSTPSAD 320
V HGK + VTAHA + ++AEG RS I ++++ SAD
Sbjct: 28 VIHGKRSHL-GVTAHASEYQLTQNKIAEGRQRSRRIDYKALNNVSSAD 74
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 29 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 29 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 29 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 29 GLPXRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 151
G+ + G++R+ TWNYS + + S +W + R +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 389 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 481
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 388
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 245 QACCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKR 403
+ACC ++ I+ ++E +K F +++KENE LKE + + L+R
Sbjct: 711 KACCQVLLQMTIDAKLEEIK-------FEEQIKENEENLKEFRLLSEKKELER 756
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 272 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 451
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +2
Query: 272 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 451
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 452 PVLLAPIPYEF 484
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_24684| Best HMM Match : Phage_rep_O (HMM E-Value=2.3)
Length = 218
Score = 28.3 bits (60), Expect = 3.9
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 83 NYSALHVHESVQSWRHCRHQRQWCSSKGYATQSIP--WKDRS-RVQRDCSCSRCDCQQAC 253
N A+ + ESV+SWR R++ + + + P DRS +V RCD Q
Sbjct: 85 NPDAMLLRESVRSWRE-NIPRKYSDLRPTSLKISPSCVPDRSEKVGISFMSGRCDMQYHG 143
Query: 254 CGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 367
R +P+ + V + S+ R+ + V R L+E
Sbjct: 144 ISRPVPESV-FEVTRIHQSRRRKRRVNHVTRAWRRLRE 180
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 152 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQ 247
C+S + D+S VQ+DCS R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -1
Query: 376 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSATRLLTITPRA*AVTLYT 203
S+ F + I D+LK L + + TD++ + +YN + + LL + T+
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286
Query: 202 RPVFPWY 182
RP PW+
Sbjct: 287 RPRLPWF 293
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 294 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 428
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 128 HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 241
HC RH ++ + AT+ +PW KD S R C + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315
>SB_36345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 194 DRSRVQRDCSCSRCDCQQACCGRIIPKRINIRVEHVKHSKCRQDFLK 334
D + + DC +RC C + IPK + + H KH QD L+
Sbjct: 123 DTCKTESDCGGNRCCVLNKFCMKKIPKDMTCYLSH-KHKCGCQDGLE 168
>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
Length = 528
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 188 WKDRSRVQRDCSCSRCDCQQACCG--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 361
WK++ ++ + C Q+ + +P + + ++ ++ SKC Q+ L KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,594
Number of Sequences: 59808
Number of extensions: 348800
Number of successful extensions: 1175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -