Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30505.Seq
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   112   1e-25
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    28   3.3  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    28   3.3  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  112 bits (270), Expect = 1e-25
 Identities = 47/58 (81%), Positives = 54/58 (93%)
 Frame = +2

Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           ++VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  ELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151



 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 49/82 (59%), Positives = 57/82 (69%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71

Query: 189 EAPPNEKPEIVKTHLRXMIIVP 254
            A   EKP  VKTHLR MII+P
Sbjct: 72  AAGVLEKPATVKTHLRDMIILP 93


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
           T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
           T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,035,363
Number of Sequences: 27780
Number of extensions: 178836
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)