Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30504.Seq
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 117 5e-27
11_01_0155 - 1287003-1287452 117 5e-27
07_03_0227 - 15398371-15398925 30 0.97
03_06_0097 - 31632238-31632525,31633386-31633769 28 3.9
11_06_0598 - 25391923-25393197 28 5.2
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 6.8
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 27 9.0
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 27 9.0
>12_01_0152 - 1168928-1169377
Length = 149
Score = 117 bits (282), Expect = 5e-27
Identities = 54/74 (72%), Positives = 62/74 (83%)
Frame = +2
Query: 221 QGWWSCSTSLRFRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 400
+G S RQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 401 GGPGARARYQKSYR 442
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 96.3 bits (229), Expect = 1e-20
Identities = 41/80 (51%), Positives = 58/80 (72%)
Frame = +3
Query: 15 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 194
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 195 SMVXIRVTVKGGGHVAQVYA 254
+ +R+ V+GGG +Q+YA
Sbjct: 67 KDIDMRIRVRGGGKTSQIYA 86
>11_01_0155 - 1287003-1287452
Length = 149
Score = 117 bits (282), Expect = 5e-27
Identities = 54/74 (72%), Positives = 62/74 (83%)
Frame = +2
Query: 221 QGWWSCSTSLRFRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 400
+G S RQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 401 GGPGARARYQKSYR 442
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 96.3 bits (229), Expect = 1e-20
Identities = 41/80 (51%), Positives = 58/80 (72%)
Frame = +3
Query: 15 RXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 194
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 195 SMVXIRVTVKGGGHVAQVYA 254
+ +R+ V+GGG +Q+YA
Sbjct: 67 KDIDMRIRVRGGGKTSQIYA 86
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 165 VPEVCTAAVWXQPSPMGARLHAAFH--DHACNTQLRWRF 55
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 27 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---XPRLLQYKLQEPILLLGKEKFS 197
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 198 MVXIRVTVKGGGHVAQVYA 254
+ V V GGG Q A
Sbjct: 153 SYDVFVKVHGGGLSGQAQA 171
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 423 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 271
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 119 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 33
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 27.1 bits (57), Expect = 9.0
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +2
Query: 209 QSDSQGWWSC-STSLRFRQAISKALI--AFYQKYVDEASKKEIKDI--LVQYDRSLLVAD 373
QS + WW S R +I+ L AFY+KY E+ K+ K+ L Q + + +
Sbjct: 24 QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQVEYEIEFSR 83
Query: 374 PRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 463
R P+ G++A R++ R K+ +
Sbjct: 84 LARFAPEFVQTDGSKARRFESGLRQPLKRRV 114
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -1
Query: 212 SDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLD 33
+D + E + E +FL+ Q + + +W +YT +S++ LA+ N L LD
Sbjct: 210 NDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAV-NAYTRLLARRLLD 268
Query: 32 GLDG 21
+G
Sbjct: 269 RPEG 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,717,979
Number of Sequences: 37544
Number of extensions: 321017
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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