Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30504.Seq
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   5e-27
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.14 
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   27   9.3  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  117 bits (282), Expect = 5e-27
 Identities = 54/62 (87%), Positives = 59/62 (95%)
 Frame = +2

Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
           RQAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKS
Sbjct: 46  RQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKS 105

Query: 437 YR 442
           YR
Sbjct: 106 YR 107



 Score = 53.6 bits (123), Expect(2) = 5e-08
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +3

Query: 153 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYA 254
           K++EPILLLGKE+F  V IRV VKGGGH +++YA
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYA 44



 Score = 20.6 bits (41), Expect(2) = 5e-08
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 27 QAVQVFGRK 53
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 278 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 388
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 197 REFFLAEQKDRFLKFVLQQSGXNQ--VQWAP 111
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 89  SWNAACKRAPIGLG*XQTAAVQTSGTYPFARQGKILYG 202
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 230 WSCSTSLRFRQAISKA 277
           WSCSTS+R R +I KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,844
Number of Sequences: 59808
Number of extensions: 338994
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)