Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30504.Seq
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 118 3e-27
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 118 3e-27
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 117 5e-27
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 35 0.038
At1g43570.1 68414.m05001 hypothetical protein 31 0.35
At3g24255.1 68416.m03045 expressed protein 29 1.4
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 4.3
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 118 bits (283), Expect = 3e-27
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2
Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
RQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKS
Sbjct: 85 RQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKS 144
Query: 437 YR 442
YR
Sbjct: 145 YR 146
Score = 102 bits (244), Expect = 2e-22
Identities = 43/82 (52%), Positives = 63/82 (76%)
Frame = +3
Query: 9 ARRXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKE 188
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 189 KFSMVXIRVTVKGGGHVAQVYA 254
+F+ V +R+ V GGGH +QVYA
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYA 83
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 118 bits (283), Expect = 3e-27
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +2
Query: 257 RQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 436
RQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKS
Sbjct: 85 RQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKS 144
Query: 437 YR 442
YR
Sbjct: 145 YR 146
Score = 102 bits (245), Expect = 1e-22
Identities = 44/82 (53%), Positives = 63/82 (76%)
Frame = +3
Query: 9 ARRXPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKE 188
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 189 KFSMVXIRVTVKGGGHVAQVYA 254
+F+ V +R+ V GGGH +QVYA
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYA 83
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 117 bits (281), Expect = 5e-27
Identities = 54/73 (73%), Positives = 63/73 (86%)
Frame = +2
Query: 224 GWWSCSTSLRFRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 403
G + S RQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFG
Sbjct: 74 GGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFG 133
Query: 404 GPGARARYQKSYR 442
GPGARAR+QKSYR
Sbjct: 134 GPGARARFQKSYR 146
Score = 101 bits (242), Expect = 3e-22
Identities = 42/76 (55%), Positives = 61/76 (80%)
Frame = +3
Query: 27 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVX 206
++VQ FGRKKTATAV YCKRG GM+++NG P++L P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 207 IRVTVKGGGHVAQVYA 254
+R+ GGG+ ++VYA
Sbjct: 68 MRIRATGGGNTSRVYA 83
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 34.7 bits (76), Expect = 0.038
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 45 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 224
GR+K + A + + G G +VN + D+ P +L ++ L + I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 225 GGGHVAQVYA 254
GGG QV A
Sbjct: 369 GGGTTGQVGA 378
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 384 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 277
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -3
Query: 381 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACLK 253
R G T++ LS+ R+ LIS S T FW A R AC+K
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACIK 183
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 233 SCSTSLRFRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 364
SC RF+ + AL F+Q++ AS IL Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,801
Number of Sequences: 28952
Number of extensions: 232278
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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