Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30503.Seq
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 120 2e-28
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 120 2e-28
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 41 1e-04
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 27 1.6
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 2.1
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 4.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.5
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 120 bits (288), Expect = 2e-28
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +2
Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
MVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 97 MVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153
Score = 91.5 bits (217), Expect = 7e-20
Identities = 45/82 (54%), Positives = 54/82 (65%)
Frame = +3
Query: 9 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
L+KKR FR F YRGV+L+QLLD+ EQL++L H GL + KLR+AK
Sbjct: 14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73
Query: 189 EAPPNEKPEIVKTHLRXMIIVP 254
EAP NEKP VKTHLR MII+P
Sbjct: 74 EAPLNEKPATVKTHLRNMIILP 95
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 120 bits (288), Expect = 2e-28
Identities = 52/57 (91%), Positives = 55/57 (96%)
Frame = +2
Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
MVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 98 MVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
Score = 92.3 bits (219), Expect = 4e-20
Identities = 45/82 (54%), Positives = 54/82 (65%)
Frame = +3
Query: 9 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
L+KKR FR F YRGV+L+QLLD+ EQL++L H GL + KLR+AK
Sbjct: 15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74
Query: 189 EAPPNEKPEIVKTHLRXMIIVP 254
EAP NEKP VKTHLR MII+P
Sbjct: 75 EAPLNEKPATVKTHLRNMIILP 96
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 364
MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 63 MVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 10 SRKSVFSGSSLTGELISISSLICPMSNSWN 99
S+ + + +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 420 GMNLELCVAPIPGLPCFTGLYVTENS 343
G+N+ LCV PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 411 LELCVAPIPGLPCFTGLYVTE 349
LELC PG+P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 284 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 370
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 8.5
Identities = 20/78 (25%), Positives = 28/78 (35%)
Frame = -2
Query: 242 HVSQVSLHDLWLLIRRSLFLGATQLXDQCHWFTFKTTSEPPARTXMH*FHELLIGHIKEL 63
H + LH ++ L L C + + PP T H FH + I L
Sbjct: 471 HSTLPILHHSKARLKSELEKAPINLRSSCLHAIYSLVNRPPFATLGHVFHNTPMKAIGLL 530
Query: 62 IEINSPVSELPENTLFLE 9
I S V +L L L+
Sbjct: 531 NLICSNVQDLSNRILHLQ 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,124
Number of Sequences: 5004
Number of extensions: 29187
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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