Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30503.Seq
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 120 5e-28
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449... 104 4e-23
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 28 3.7
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 27 6.5
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 27 6.5
10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696 27 8.6
05_01_0213 - 1606383-1606816,1607695-1608355 27 8.6
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 120 bits (290), Expect = 5e-28
Identities = 52/57 (91%), Positives = 56/57 (98%)
Frame = +2
Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
M+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 354 MIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 410
Score = 84.2 bits (199), Expect = 5e-17
Identities = 50/101 (49%), Positives = 59/101 (58%), Gaps = 21/101 (20%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRA---- 182
KKR FRK++YRGVDLD LLDM + L++L GLKRKPMAL+ KLR+A
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311
Query: 183 -----------------KKEAPPNEKPEIVKTHLRXMIIVP 254
KK+AP EKPE V+THLR MIIVP
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVP 352
>07_01_0604 -
4491884-4491993,4493030-4493225,4494269-4494326,
4494459-4494613,4495092-4495115,4495377-4495489,
4499943-4500129
Length = 280
Score = 104 bits (250), Expect = 4e-23
Identities = 50/80 (62%), Positives = 59/80 (73%)
Frame = +3
Query: 15 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
KKR FRK++YRGVDLD LLDM + L++L GLKRKPMAL+ KLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183
Query: 195 PPNEKPEIVKTHLRXMIIVP 254
P EKPE V+THLR MIIVP
Sbjct: 184 PAGEKPEPVRTHLRNMIIVP 203
Score = 84.6 bits (200), Expect = 4e-17
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +2
Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 376
M+GSIVG+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 205 MIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 244
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 49 ELISISSLICPM-SNSWN*CMXVRAGGSLVVLNVNQWHWS 165
E+I I L+C + S WN + + A ++ + VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 248 DDHVSQVSLHDLWLLIRRSLFLGATQLXDQCHWFT 144
DD+V+ VSL+ L L ++L L +CH+FT
Sbjct: 656 DDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFT 690
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 147 KPMALVXKLRRAKKEAPPNEKPEIVKTHLRXMIIVPXWSVQLSAF 281
K A V KL + EA PN++P++ T R +I P S+ L A+
Sbjct: 263 KYSAAVTKLIKDMLEASPNDRPDV--TQARALIDWPFISMILGAY 305
>10_02_0185 - 6386761-6387122,6387589-6387826,6388215-6389696
Length = 693
Score = 27.1 bits (57), Expect = 8.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 200 RRSLFLGATQLXDQCHWFTFKTTSEPPARTXMH*FHELLI--GHIKELIEINSPVSELPE 27
R+S L AT L D H F K + PAR FH L+ GH + PVS +
Sbjct: 264 RQSPALKAT-LQDAIHGFYLKALARLPARELRRRFHRSLLEAGHCYGPFD---PVSNIII 319
Query: 26 NTLFLE 9
NT++ +
Sbjct: 320 NTIWYD 325
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 384 PVSVLHTAQGSFRSSRASKTTSRLSVT 464
PVSVLH S SS +S TT+ + T
Sbjct: 176 PVSVLHAQHSSSSSSSSSTTTTTTTTT 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,439
Number of Sequences: 37544
Number of extensions: 203406
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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