Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30503.Seq
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   2e-28
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.0  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  122 bits (293), Expect = 2e-28
 Identities = 52/57 (91%), Positives = 56/57 (98%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           M+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 93  MIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149



 Score =  117 bits (282), Expect = 5e-27
 Identities = 56/82 (68%), Positives = 66/82 (80%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           +K+KR FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+ +LR+AKK
Sbjct: 10  IKRKRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKK 69

Query: 189 EAPPNEKPEIVKTHLRXMIIVP 254
           EA P EKPE+VKTHLR MIIVP
Sbjct: 70  EAAPMEKPEVVKTHLRNMIIVP 91


>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 527

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 1   TKPSRKSVFSGSSLTGELISISSLICPMSNSWN*CMXVRAGGSLVVLNV 147
           TKP   S  SGS+  G L   SS  C  S+S +  + V  GG + V  V
Sbjct: 179 TKPDAMSASSGSASAGRLYGNSSW-CSTSSSVSEYLQVDLGGVMTVSGV 226


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 308  EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIP 421
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,142
Number of Sequences: 59808
Number of extensions: 226203
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)