Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30503.Seq
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo...   120   7e-28
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro...   120   7e-28
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)           117   5e-27
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...   116   7e-27
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo...   116   9e-27
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative           85   2e-17
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    64   7e-11
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    40   0.001
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    29   2.4  

>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  120 bits (288), Expect = 7e-28
 Identities = 50/57 (87%), Positives = 56/57 (98%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 96  MIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 47/80 (58%), Positives = 57/80 (71%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+ KLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKPE V+THLR MIIVP
Sbjct: 75  PAGEKPEPVRTHLRNMIIVP 94


>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
           similarity to Oryza 40S ribosomal protein S15. ESTs
           gb|R29788,gb|ATTS0365 come from this gene
          Length = 152

 Score =  120 bits (288), Expect = 7e-28
 Identities = 50/57 (87%), Positives = 56/57 (98%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 96  MIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152



 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 47/80 (58%), Positives = 57/80 (71%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF ++GVDLD LLDM  + L++L           GL RKPMAL+ KLR+AK+EA
Sbjct: 15  KKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREA 74

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKPE V+THLR MIIVP
Sbjct: 75  PQGEKPEPVRTHLRNMIIVP 94


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score =  117 bits (281), Expect = 5e-27
 Identities = 49/57 (85%), Positives = 56/57 (98%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           M+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 93  MIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149



 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 47/80 (58%), Positives = 55/80 (68%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  E L++            GL RKPMAL+ KLR+AK EA
Sbjct: 12  KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKP  V+THLR MIIVP
Sbjct: 72  PAGEKPASVRTHLRNMIIVP 91


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score =  116 bits (280), Expect = 7e-27
 Identities = 48/57 (84%), Positives = 56/57 (98%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           M+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 94  MIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150



 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 47/80 (58%), Positives = 56/80 (70%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF++RGVDLD LLDM  + L++L           GL RKPMAL+ KLR+AK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 195 PPNEKPEIVKTHLRXMIIVP 254
           P  EKP  V+THLR MIIVP
Sbjct: 73  PAGEKPAAVRTHLRNMIIVP 92


>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 152

 Score =  116 bits (279), Expect = 9e-27
 Identities = 48/57 (84%), Positives = 55/57 (96%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 427
           M+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+HG+PG GATHSSRFIPLK
Sbjct: 96  MIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152



 Score =  103 bits (246), Expect = 9e-23
 Identities = 47/82 (57%), Positives = 60/82 (73%)
 Frame = +3

Query: 9   LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           L KKR F+KF+++GVDLD LLDMP + L+EL           GL RKPMAL+ KLR+AK 
Sbjct: 13  LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72

Query: 189 EAPPNEKPEIVKTHLRXMIIVP 254
           +AP  EKPE+V+THLR M+I+P
Sbjct: 73  DAPAGEKPEVVRTHLRNMVIMP 94


>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
          Length = 160

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKKEA 194
           KKR F+KF++RG ++D LL M N  L +L +         GLK++P+ L+ KLRRAKKEA
Sbjct: 17  KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76

Query: 195 PPNE--KPEIVKTHLRXMIIVP 254
                 KPE+VKTHLR MIIVP
Sbjct: 77  SDENKMKPEVVKTHLRNMIIVP 98



 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 4/61 (6%)
 Frame = +2

Query: 257 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGA----THSSRFIPL 424
           M+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V H RP I        S+RFIPL
Sbjct: 100 MIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPL 159

Query: 425 K 427
           +
Sbjct: 160 R 160


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 31/58 (53%), Positives = 38/58 (65%)
 Frame = +3

Query: 15  KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVXKLRRAKK 188
           KKRIF+KF++RGVDLD LLDM  E L++            G  RKPMAL+ KLR+A K
Sbjct: 12  KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +2

Query: 260 VGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 382
           V S V IYNGKT  + +I    +GH  GEF+ T K  KH +
Sbjct: 170 VDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 311 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 412
           +KPE+ G Y  E    Y P+K   PG  ++ SSR
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,103
Number of Sequences: 28952
Number of extensions: 159247
Number of successful extensions: 346
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)