Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30502.Seq
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.100
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 30 0.30
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 29 0.53
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 29 0.70
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.93
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 28 1.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.6
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 2.1
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 2.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.8
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 5.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.6
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 6.6
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.7
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 8.7
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 8.7
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 8.7
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.9 bits (69), Expect = 0.100
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 86 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGVPKK 265
++A ++K EV T P S V++ P+KK + +E T E +P E PK
Sbjct: 440 ESAEEQKPSKEPEVKPTTPSASKVEE-PSKKRDEDNHQKEETVTQPKREKTPVEKSFPKP 498
Query: 266 AT 271
A+
Sbjct: 499 AS 500
Score = 29.9 bits (64), Expect = 0.40
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 101 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 241
K+E P E + +P SPV S K E +E K +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 119 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGV----PKKATMHLRT 286
E+ + EP E+P S KVE A + AP + A P KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 287 VMPQKRKRLV 316
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 29.5 bits (63), Expect = 0.53
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 92 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGVPKKAT 271
++D+ +P ++S K SP K+ +K ++A + TDE P D N T
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 272 MHLRT 286
LRT
Sbjct: 646 SSLRT 650
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 137 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGVPKKAT-MHLRTVMPQKRK 307
+P +PVKKS K A + N + + S A + PK A+ L P++RK
Sbjct: 195 QPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRK 252
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.93
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 107 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGVPK 262
++ PE+ + + PVKK P+KK + A++N E DE + E K
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEK 108
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 98 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGVPKKATMH 277
D+ A +E + E E + + E E ++ T+E P+++P E K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 278 LRTVMP 295
V+P
Sbjct: 106 FYDVVP 111
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 74 ATMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAEN 250
++ D + K + + +S EP + VKK +KK E + S + + E S +E+
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 80 MADAAVDKKEVAPEEVT-STEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGV 256
+A V+ KEV +EV+ +TEP PV + ++E E +PE EN V
Sbjct: 240 VATDQVESKEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHSPEAKVTENDV 299
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 119 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 223
+E + KES K++PA+K + + ENGT+E
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEE 85
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.8
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -2
Query: 288 TVLRCIVAFFGTPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 109
TV+ V + + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 108 SFLSTAASAIV 76
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 633 KYLANCKFMYVTASGLNASQ*TDSHKIECCMLVFTY 740
++LA C F+Y+ S + +HK+ CC Y
Sbjct: 56 RFLAKC-FLYILRCMSTVSLLSSAHKMNCCNFYSNY 90
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/60 (18%), Positives = 31/60 (51%)
Frame = +2
Query: 128 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGVPKKATMHLRTVMPQKRK 307
++ EP+ + + + ++ E E +EN D+ ++ +N + ++ L + + ++RK
Sbjct: 297 STAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFISELESSIQKRRK 356
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 104 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 250
++V ++TS EPK + KSP +K + ++ T++ DS +N
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDN 1020
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +2
Query: 80 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGV 256
+A+ + +AP + ++ + + VK A+ +E + K+NGT+ + ++ E+ V
Sbjct: 1273 VAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNESHV 1331
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 137 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGV 256
E +ESP+K P KK + E T + SP E+ +
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVESKI 931
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 149 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 253
+P+K+ PAK ++ + A SPA NG
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNG 147
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = -2
Query: 255 TPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIV 76
T ++ ++ ASS PF ++++++ G+F T + G+ +V+ S T + +++ V
Sbjct: 556 TSVNSTTATSASSTPFGNSTITSSASGSTGEF-TNTNSGNGDVSGSVTTPTSTPLSNSTV 614
Query: 75 A 73
A
Sbjct: 615 A 615
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 234 SSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 73
SSG++ VP S+P L L D+ T + + ATSF T S I A
Sbjct: 168 SSGSTGVPKSMPFLMKKYA-LGYDYGTPEFMNHLSTPMVMATSFALTTLSWINA 220
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +2
Query: 74 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 253
A A A + + +V+ + + +PK++PV S A + A N + T E +
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266
Query: 254 VPKK 265
KK
Sbjct: 267 SKKK 270
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 86 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 244
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 250 WCAEESNDASENGDATEKKETGVKRKSVAL 339
W A SN+ ++N AT K+ T + + V L
Sbjct: 112 WKANNSNEKAQNKIATNKESTDILPEEVQL 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,211
Number of Sequences: 5004
Number of extensions: 54019
Number of successful extensions: 211
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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