Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30500.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    26   0.28 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.9  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 209 FITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 60
           FI   ++  K  I   +K ++ L   + K + DLS +   T TIE +  D
Sbjct: 68  FIKMVKQKHKKDIRADKKALQKLRREVEKAKRDLSSVHKTTLTIENLLAD 117


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 735 KDSTIVGRVNYFSMHQPMIQAYLSTPHIIINLYGKTIF 622
           K+  + G+    ++HQP  + Y     +++   G+T F
Sbjct: 263 KEMAMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAF 300


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 735 KDSTIVGRVNYFSMHQPMIQAYLSTPHIIINLYGKTIF 622
           K+  + G+    ++HQP  + Y     +++   G+T F
Sbjct: 263 KEMAMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAF 300


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 718 WKGQLF*HASTNDPSVPLHAAYHYQ 644
           WK  +  H    DP  P H  Y Y+
Sbjct: 472 WKPSM--HGGVCDPYTPWHTFYDYR 494


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -3

Query: 695 CINQ*SKRTSPRRISLSICMVRRFFKFSPDFNNSRSILAGCSGSLSMNCD 546
           C N   KR  PR  S     VR      P F+N  +     S  +++N D
Sbjct: 177 CFNIRLKRAGPRTESAVYEPVRIMGVHRPGFDNDCNKNTSTSKEIALNND 226


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 VSLSFKKCCFQKLNTLFFVFYSQFKVPLL 197
           + L F  C F  L T+++++YS  +  ++
Sbjct: 141 LQLVFVFCYFIYLFTVYYIYYSVHEASII 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,422
Number of Sequences: 336
Number of extensions: 2985
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)