Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30500.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot...    31   0.81 
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    29   2.5  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    29   2.5  
At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical t...    29   3.3  
At1g58070.1 68414.m06581 expressed protein                             29   3.3  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    29   4.3  
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    28   5.7  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    28   5.7  
At3g47400.1 68416.m05154 pectinesterase family protein similar t...    27   10.0 
At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S...    27   10.0 
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   10.0 

>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
           contains Pfam profile PF00439: Bromodomain
          Length = 475

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 170 EDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRD 60
           E K+KR+  L+AALLK++  +  L+S+  +++  S D
Sbjct: 75  ELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESND 111


>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 457 FLYITLFLSRCIGSDNE*DKREL 525
           FL +T F+SRC+ +D E DK+ L
Sbjct: 10  FLLVTTFVSRCLSADIESDKQAL 32


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 457 FLYITLFLSRCIGSDNE*DKREL 525
           FL +T F+SRC+ +D E DK+ L
Sbjct: 10  FLLVTTFVSRCLSADIESDKQAL 32


>At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical to
           GI:7677266
          Length = 384

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 556 ILKLPEHPAKILRELLKSGENLKNRLTIQIDND 654
           ++  P HPA +  E +K  +NLK  LT  I +D
Sbjct: 99  LISTPFHPAYVTAERIKKAKNLKLLLTAGIGSD 131


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 152 IKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHE 39
           +K LEA + +T+T++  L+ R +  E     LN E+H+
Sbjct: 133 LKKLEAEITETKTEVKMLKERESETEVALATLNAELHK 170


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 191 RDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNE 18
           +DF    E+++KR+K LEAA+   Q   S +++  A   K   D   E+ E  ++  E
Sbjct: 356 KDFSKKYEEQDKRLKLLEAAIKSIQ---SGIRTEDACGSKEIDDKENELEEGSDAETE 410


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -3

Query: 179 LAIEDKEKRIKF----LEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESR 24
           +++EDK  R++     LE  L K QT++   + +  ++EK  +DL   I  + E +
Sbjct: 458 ISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEK 513


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 179 LAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPE 30
           +AIED+E R    E A+   Q  L +LQ +     + +R+ +++I E  E
Sbjct: 180 VAIEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKE 229


>At3g47400.1 68416.m05154 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Vitis vinifera
           GI:15081598, Lycopersicon esculentum SP|Q43143
           SP|P14280; contains Pfam profile PF01095 pectinesterase
          Length = 594

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 119 QTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLDL 3
           QT LS  Q+   T    S DLN+    +P   N+N+ DL
Sbjct: 192 QTWLSTAQTNIETCRSGSEDLNVSDFVMPVISNKNLSDL 230


>At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T)
          Length = 276

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 163 KKSVLSFWKQHFL 125
           K +VLSFW+QHF+
Sbjct: 33  KSNVLSFWRQHFI 45


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 163 KKSVLSFWKQHFL 125
           K +VLSFW+QHF+
Sbjct: 154 KSNVLSFWRQHFI 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,660
Number of Sequences: 28952
Number of extensions: 220328
Number of successful extensions: 606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)