Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30498.Seq
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          119   2e-27
11_01_0155 - 1287003-1287452                                          119   2e-27
07_03_0227 - 15398371-15398925                                         30   0.97 
11_06_0598 - 25391923-25393197                                         28   5.2  
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533...    27   6.8  
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365...    27   9.0  
03_06_0097 - 31632238-31632525,31633386-31633769                       27   9.0  
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309     27   9.0  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  119 bits (286), Expect = 2e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 39/77 (50%), Positives = 56/77 (72%)
 Frame = +3

Query: 24  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSM 203
           P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F  
Sbjct: 9   PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKD 68

Query: 204 VXIRVTVKGGGHVAQVY 254
           + +R+ V+GGG  +Q+Y
Sbjct: 69  IDMRIRVRGGGKTSQIY 85


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  119 bits (286), Expect = 2e-27
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +2

Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
           +G    S    IRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKF
Sbjct: 76  RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135

Query: 404 GGPGARARYQKSYR 445
           GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 39/77 (50%), Positives = 56/77 (72%)
 Frame = +3

Query: 24  PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSM 203
           P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F  
Sbjct: 9   PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKD 68

Query: 204 VXIRVTVKGGGHVAQVY 254
           + +R+ V+GGG  +Q+Y
Sbjct: 69  IDMRIRVRGGGKTSQIY 85


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -3

Query: 168 VPEVCTAAVWXQPSPMGARLHAAFH--DHACNTQLRWRF 58
           +P +C A  W  P+   A  H  FH     C+ + RW +
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 426 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 274
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>01_05_0500 +
           22752190-22752329,22752957-22753032,22753292-22753351,
           22754718-22754882,22756299-22756358
          Length = 166

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 122 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 36
           W  V T H +T +A R+C G F   ++LD
Sbjct: 18  WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45


>11_04_0272 -
           15631598-15631898,15633162-15633291,15636394-15636544,
           15636632-15636730,15636912-15637063,15637079-15637301
          Length = 351

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +2

Query: 212 QSDSQGWWSC-STSLPIRQAISKALI--AFYQKYVDEASKKEIKDI--LVQYDRSLLVAD 376
           QS +  WW     S   R +I+  L   AFY+KY  E+ K+  K+   L Q +  +  + 
Sbjct: 24  QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQVEYEIEFSR 83

Query: 377 PRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 466
             R  P+     G++A R++   R   K+ +
Sbjct: 84  LARFAPEFVQTDGSKARRFESGLRQPLKRRV 114


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 30  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---XPRLLQYKLQEPILLLGKEKFS 200
           Q +   GR+KTA A    + G G + +N R         P  ++Y  + P++ LG E  +
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152

Query: 201 MVXIRVTVKGGG 236
              + V V GGG
Sbjct: 153 SYDVFVKVHGGG 164


>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
          Length = 330

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 215 SDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLD 36
           +D +  E  + E   +FL+   Q +  +  +W  +YT +S++ LA+ N     L    LD
Sbjct: 210 NDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAV-NAYTRLLARRLLD 268

Query: 35  GLDG 24
             +G
Sbjct: 269 RPEG 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,398
Number of Sequences: 37544
Number of extensions: 326826
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)