Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30495.Seq
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    55   1e-08
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.24 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   6.9  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENKYDENEE 442
           +PL +    + +++++  PEF+  ++P++DW  L      +G+   LP    +  D+++E
Sbjct: 23  FPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNY-SLPDEKPDLVDDSDE 81

Query: 443 -FLKKAHKVLLEXXXXXXPLDLVXNXEDQFPISKGIPNM 556
             LK  H VLLE       + +  N    +PI +GIPNM
Sbjct: 82  VLLKSLHNVLLETEITEGKM-VCGNCGHVYPIFEGIPNM 119


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 415
           F  +FI  V+ +++WE+L +     G  +GL R+L
Sbjct: 100 FQEQFIENVVKEINWEILAILISLSGIENGLVRNL 134


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLP 406
           F+PE  +  +  LDW   W  A S G    LP
Sbjct: 577 FSPEVRNGFLKTLDWLSQWACARSYGLGTRLP 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,419
Number of Sequences: 5004
Number of extensions: 52747
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)