Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30495.Seq
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-1|CAB03840.1|  125|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical pr...    31   1.2  

>Z81462-1|CAB03840.1|  125|Caenorhabditis elegans Hypothetical
           protein C04H5.1 protein.
          Length = 125

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
 Frame = +2

Query: 242 LERCLTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLEN 421
           L+    GYPL +       K+++F+ +    ++ ++ +E L VAA ++  SD +PR    
Sbjct: 14  LKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAAVNQSDRIPREKPE 73

Query: 422 KYDE-NEEFLKKAHKVLLEXXXXXXPLDLVXNXEDQFPISKGIPNM 556
           K+DE  +E L+  H +L+        L +    +  FPI  GIPNM
Sbjct: 74  KWDELTDEQLRVFHHLLMNIDVIDGEL-ICPETKTVFPIRDGIPNM 118


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical protein
            T04G9.1 protein.
          Length = 1610

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 257  TGYPLAINATDIKV-KEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 415
            T Y L +    +K+ +E+D NP    ++ PK+D   L++AADS+  + G  R L
Sbjct: 1159 TEYLLLLAEVKVKLFEEIDVNPRVREQLRPKIDLIDLYMAADSMNVAKGRLRRL 1212


>U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical
           protein F18F11.4 protein.
          Length = 550

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 615 YF*VQAXNWGTTALQPXXKGILGIPLEIGNWSS-XFXTRSRGPPQXPPSNKT 463
           YF + +  W T  +    K  LG  LE+ +WS     +RSRG  +  P+++T
Sbjct: 223 YFYLHSYTWQTKKVLNFYKQSLGDDLELLDWSDLPVHSRSRGDYEKDPNSRT 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,411
Number of Sequences: 27780
Number of extensions: 291708
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)