Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30495.Seq
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22270.1 68414.m02783 expressed protein contains Pfam domain ...    73   3e-13
At1g78190.1 68414.m09111 expressed protein                             66   2e-11
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    28   7.9  

>At1g22270.1 68414.m02783 expressed protein contains Pfam domain
           PF03966: Protein of unknown function (DUF343)
          Length = 124

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +2

Query: 257 TGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENK--YD 430
           +G+PL I A ++  KEVDFNP+FI  +  K++W+ L   A S+G+++ LP    +     
Sbjct: 18  SGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAE-LPEESPDAAVLK 76

Query: 431 ENEEFLKKAHKVLLEXXXXXXPLDLVXNXEDQFPISKGIPNM 556
            +E FLKK H  LLE       L +      +FP++KGIPNM
Sbjct: 77  SDEPFLKKLHHALLELHLEEGAL-VCPETGRKFPVNKGIPNM 117


>At1g78190.1 68414.m09111 expressed protein
          Length = 124

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLEN--KYDEN 436
           +PL I A  + VKEVDFNP+F+  +  K+DW+ L   A S+ +++ LP +  +    + +
Sbjct: 20  FPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTE-LPDNAPDTTTLESD 78

Query: 437 EEFLKKAHKVLLEXXXXXXPLDLVXNXEDQFPISKGIPNM 556
           E FL+K H  LLE       L +      +F +SKGIPNM
Sbjct: 79  ETFLRKFHHALLELHLEEGSL-VCPETGRKFSVSKGIPNM 117


>At4g14760.1 68417.m02271 M protein repeat-containing protein
           contains Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 407 RSLENKYDENEEFLKKAHKVLLEXXXXXXPLDLV 508
           R+L  +YD     L++AHKV++E        D++
Sbjct: 45  RALAERYDHTTVELRRAHKVMVEAFPNQMSFDMI 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,942
Number of Sequences: 28952
Number of extensions: 262051
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)