Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30492.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    31   0.61 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    31   0.61 
At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containi...    29   3.3  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 37   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEK 171
            +W ++ L L  VF   +A       PF ++ P H+IED  +E EK
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1192


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 37   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEK 171
            +W ++ L L  VF   +A       PF ++ P H+IED  +E EK
Sbjct: 1147 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1191


>At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 780

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 640 IYFNLDDWNSNNKKYYMLFNLW*KYME 720
           +Y +L  W+   +K  + FNLW KY++
Sbjct: 587 VYRSLMTWSCRKRKVLVAFNLWMKYLK 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,780,800
Number of Sequences: 28952
Number of extensions: 313627
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)