Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30490.Seq
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.5  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 29 RYTKLKITMAKPKG 70
          RY+KLK    KPKG
Sbjct: 26 RYSKLKRNWRKPKG 39


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 59  KPKGERKGKSAINEVLPVNIQLIYTN 136
           KPK    GK   + ++P N+ +I T+
Sbjct: 42  KPKPLWTGKQISSLIIPGNVNMIRTH 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,286
Number of Sequences: 438
Number of extensions: 2126
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)