Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30489.Seq
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)                 31   1.3  
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  

>SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)
          Length = 423

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 578 YCTSASFNSILGIPLEIGNCLPDLDKSSV--PLQLPPLTRLYELSSKTL 438
           YC S  F + L +P E   CL D+D   V  P  LP      +L  + L
Sbjct: 48  YCASEDFKANLQLPSEASLCLVDIDNCKVLSPEDLPEFPNKQDLIEELL 96


>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 275 INATDIKVKEVDFN-PEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLE 418
           +  T  ++ +++FN P F S VI  L W + W   D+  H  G  R  E
Sbjct: 73  VRYTSQRIMKMNFNHPGFTSIVISMLHWRLFWPGKDT--HGGGKERERE 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,256,086
Number of Sequences: 59808
Number of extensions: 385821
Number of successful extensions: 853
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)