Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30487.Seq
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    38   1e-04
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    35   6e-04
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.2  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
 Frame = -2

Query: 419 PSRLMLPKGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGY 279
           P  ++LPKGT  G+P  LFV +  Y           T  + + F      + PD +  GY
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGY 641

Query: 278 PFDR 267
           PFDR
Sbjct: 642 PFDR 645



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 661 KMFLGPKYDETAFLSALEDNWMNFYELDWFVQKVNPGQSQITRSSTD 521
           ++FL P++DE        +    F ELD F   +  G + ITR ST+
Sbjct: 500 RIFLAPQFDERGNPWLFRNQKDMFIELDRFAVSLKQGTNTITRHSTE 546


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 661 KMFLGPKYDETAFLSALEDNWMNFYELDWFVQKVNPGQSQITRSST 524
           ++FL PK DE        D  + F ELD F   +  GQ+ ITR+S+
Sbjct: 501 RIFLAPKTDERGNPWLFRDQKIMFIELDKFTVNLKQGQNTITRASS 546



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
 Frame = -2

Query: 419 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGY 279
           P  +++PKGT +G   QLFV +  Y+    +                   + PD +  GY
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGY 642

Query: 278 PFDR 267
           PFDR
Sbjct: 643 PFDR 646


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 511 FKKTLYRWPKSTSSWTK 461
           F +   RWP   + WTK
Sbjct: 109 FSQVASRWPLFLNEWTK 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,748
Number of Sequences: 336
Number of extensions: 3409
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)