Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30487.Seq
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 32 0.10
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.74
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 27 3.0
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 26 5.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.2
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 26 5.2
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 26 5.2
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 26 5.2
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 6.9
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 6.9
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 31.9 bits (69), Expect = 0.10
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -3
Query: 601 WMNFYELDWFVQKVNPGQSQITRSSTDFAFFKKTLYRWPKSTSSWTKERFLLTC 440
W FY L F QK N S +TR + FF LY W S++ E L C
Sbjct: 213 WFQFY-LKLFSQKDNVSSSDLTR----WFFFYTLLYPWIALVSAFVAETMTLCC 261
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 362 VFVYPYEPTPKESEPFKSVVPDNKPFGYP 276
+ VY + P +SE F +VV DN YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 558 LTFCTNQSSS*KFIQLSSRAERKAVSSYLGPRNILT 665
LT C S K + +A KA+ +Y GPR++LT
Sbjct: 404 LTACLAASRKRKGLDAIDKAFLKALKNYPGPRSMLT 439
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +3
Query: 360 YKQLEGESIVCTLRQHQPRRHSVR------GVEHVSRNLSLVQELVDFGHR 494
+K L G R+ RRH V G+ ++RN S+ + L+D +R
Sbjct: 261 HKVLHGVMFDLAEREGTRRRHQVDTIVEGVGINRMTRNFSIAEPLIDMAYR 311
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 274 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 453
+G + L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 203 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 66
+E + Y I Q K YNA ++R S R +T + +SR++ +YV
Sbjct: 24 REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 203 KENYSPIYLTFLTIHQIKRNYNA-----LIRKSKRTLTITVYNSRISCEYV 66
+E + Y I Q K YNA ++R S R +T + +SR++ +YV
Sbjct: 24 REGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 323 EPFKSVVPDNKPFGYPFDRPVLP 255
E KS VPD P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = -3
Query: 679 PLTPVVKMFLGPKYDETAFLSALEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFF 509
P P+ K G + A+ E N DW + K+ P ++T D FF
Sbjct: 51 PADPIRKA--GVFVETGAWYDGWETRRHNTAPCDWVIVKLGPSSGRVTGCEIDTTFF 105
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 595 NFYELDWFVQKVNPGQSQITRSSTDFAFFKKTLYRWP 485
NFY ++F +K+ +S + FA+ T WP
Sbjct: 186 NFYSSNYFAEKLIDQLKNREKSQSFFAYLPFTAPHWP 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,896
Number of Sequences: 5004
Number of extensions: 57477
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -