Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30487.Seq
         (771 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88613-1|BAA13651.1|  436|Homo sapiens hGCMa protein.                  32   2.6  
BC096288-1|AAH96288.1|  436|Homo sapiens glial cells missing hom...    32   2.6  
AL512347-2|CAI14905.1|  436|Homo sapiens glial cells missing hom...    32   2.6  
AB047819-1|BAB18039.1|  436|Homo sapiens chorion-specific transc...    32   2.6  
AB041714-1|BAA94757.1|  436|Homo sapiens chorion-specific transc...    32   2.6  
AB026493-1|BAA77250.2|  436|Homo sapiens GCM motif protein protein.    32   2.6  
CR533556-1|CAG38587.1|  789|Homo sapiens TAX1BP1 protein.              30   8.0  
BC050358-1|AAH50358.1|  789|Homo sapiens Tax1 (human T-cell leuk...    30   8.0  

>D88613-1|BAA13651.1|  436|Homo sapiens hGCMa protein.
          Length = 436

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 254 STSNNL 237
           + + NL
Sbjct: 358 NPAGNL 363


>BC096288-1|AAH96288.1|  436|Homo sapiens glial cells missing
           homolog 1 (Drosophila) protein.
          Length = 436

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 254 STSNNL 237
           + + NL
Sbjct: 358 NPAGNL 363


>AL512347-2|CAI14905.1|  436|Homo sapiens glial cells missing
           homolog 1 (Drosophila) protein.
          Length = 436

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 254 STSNNL 237
           + + NL
Sbjct: 358 NPAGNL 363


>AB047819-1|BAB18039.1|  436|Homo sapiens chorion-specific
           transcription factor GCMa protein.
          Length = 436

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 254 STSNNL 237
           + + NL
Sbjct: 358 NPAGNL 363


>AB041714-1|BAA94757.1|  436|Homo sapiens chorion-specific
           transcription factor GCMa protein.
          Length = 436

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 254 STSNNL 237
           + + NL
Sbjct: 358 NPAGNL 363


>AB026493-1|BAA77250.2|  436|Homo sapiens GCM motif protein protein.
          Length = 436

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 434 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 255
           S +    R  L    Y  +PF L  +   + P+   SEPF   +P   P       P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357

Query: 254 STSNNL 237
           + + NL
Sbjct: 358 NPAGNL 363


>CR533556-1|CAG38587.1|  789|Homo sapiens TAX1BP1 protein.
          Length = 789

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 571 VQKVNPGQSQITRSSTDFAFFKKTLYRWPKSTSSWTKERFLLTCSTP 431
           +Q  NP  SQ TR   D AF+   + R P    SW  E  ++ CS P
Sbjct: 633 LQYGNPYASQETRDGADGAFYPDEIQRPPVRVPSWGLEDNVV-CSQP 678


>BC050358-1|AAH50358.1|  789|Homo sapiens Tax1 (human T-cell
           leukemia virus type I) binding protein 1 protein.
          Length = 789

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 571 VQKVNPGQSQITRSSTDFAFFKKTLYRWPKSTSSWTKERFLLTCSTP 431
           +Q  NP  SQ TR   D AF+   + R P    SW  E  ++ CS P
Sbjct: 633 LQYGNPYASQETRDGADGAFYPDEIQRPPVRVPSWGLEDNVV-CSQP 678


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,711,049
Number of Sequences: 237096
Number of extensions: 1999837
Number of successful extensions: 7388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7388
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)