Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30487.Seq
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    28   8.5  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 344 EPTPK-ESEPFKSVVPDNKPFGYPFDRPV 261
           +PTPK +SEPF   +P +KP   PF  P+
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPM 35


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 338 TPKESEPFKSVVPDNKPFGYPFDRPVLPST 249
           TPK  +  +  VP N+P    F RPV+P T
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPKT 157


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 353 YPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPSTSNNLT 234
           YP +   KE + ++S   + KP+  PFD      + NNL+
Sbjct: 355 YPIQEVKKEKKNYESYYKNWKPYRRPFDLNPTQISINNLS 394


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 353 YPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPSTSNNLT 234
           YP +   KE + ++S   + KP+  PFD      + NNL+
Sbjct: 355 YPIQEVKKEKKNYESYYKNWKPYRRPFDLNPTQISINNLS 394


>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 215 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 87
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 215 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 87
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -2

Query: 356  VYPYEPTPKESEPFKSVVPDN--KPFGYPFDRPVLPSTSNNLTCSSRRSWSTMKEN 195
            V P    P  +EP K + P    KP   P +RP  P+ S   T S   S S   ++
Sbjct: 1328 VTPKTSIPPPTEPEKPIKPSEQKKPNAIPVERPKQPTPSKARTPSKTPSQSNRAQH 1383


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 213 VYHEGELFPYLFNIPHYTPDK 151
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,123
Number of Sequences: 27780
Number of extensions: 312188
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)