Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30485.Seq
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    48   1e-05
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    47   2e-05
01_06_1437 - 37358912-37359226                                         29   4.1  
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38...    28   9.5  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
 Frame = -3

Query: 671 IITTWPL---GLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLI 507
           I+  W L   G L  +G +D LDG++AR   G ++  GS+LDP+ADKVL+  + I+++
Sbjct: 156 IVNEWYLPAFGTLALSGASDWLDGFLARKM-GINSVFGSYLDPLADKVLIGCVAIAMV 212



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -2

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTLSRY--FDVTHATAQLAPTFISK 334
           +DL+   L  L+V RD+ LV      R  SL     + S +   D  H   ++ P FISK
Sbjct: 214 KDLLHPGLVGLVVVRDLLLVGGAVYKRASSLGWKWNSWSDFVNLDAIHRE-KVKPLFISK 272

Query: 333 VNTAVQLLLVGTTLASPVFG 274
           VNT  QL+LV   L  P FG
Sbjct: 273 VNTVFQLMLVAAALLQPEFG 292


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -3

Query: 650 GLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           G+ + A +TD LDG+IAR  +   T  G+FLDP+ADK++VA   + L
Sbjct: 169 GIFLAAAVTDWLDGYIARKMQ-LGTPFGAFLDPVADKLMVAATLVLL 214


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 411 PPPRTLSRYFDVTHATAQLAPTFI 340
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


>03_01_0046 -
           384444-384460,384649-384770,385144-385301,385379-385479,
           385748-385823,385983-386093,386165-386356,386729-387024,
           388299-388497
          Length = 423

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 495 IPISLTLLIVGRDIALVVAGFVIRYISLPPPR 400
           +P+S  LL  G   A V A F +  +S  PPR
Sbjct: 35  LPLSSPLLAAGAAAAAVTAAFSLSSLSFSPPR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,671,831
Number of Sequences: 37544
Number of extensions: 388849
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)