Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30484.Seq
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 110 1e-25
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 110 1e-25
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.58
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 27 2.3
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 9.5
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.5
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 9.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.5
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 110 bits (264), Expect = 1e-25
Identities = 53/80 (66%), Positives = 59/80 (73%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHXLGVIVNKRV 248
TG VYNVT +GV++ K V
Sbjct: 61 TGVVYNVTQSSVGVLIYKVV 80
Score = 100 bits (240), Expect = 1e-22
Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
R + KR+N+R+ HVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142
Query: 434 -GTEKPVLLAPIPYE 475
+PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 110 bits (264), Expect = 1e-25
Identities = 53/80 (66%), Positives = 59/80 (73%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 189 TGRVYNVTAHXLGVIVNKRV 248
TG VYNVT +GV++ K V
Sbjct: 61 TGVVYNVTQSSVGVLIYKVV 80
Score = 100 bits (239), Expect = 2e-22
Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
R + KR+N+R+ HVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 83 RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142
Query: 434 -GTEKPVLLAPIPYE 475
+PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.58
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -2
Query: 448 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 284
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 283 TDIDALRYN 257
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 121 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 5
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 230 DCQQACSRRIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
+C + CS + P I + K DF KR E +R+ +E A KTV L Q
Sbjct: 157 ECIRLCSL-VHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 359 EAKAAGKTVNLKRQPAPPKAAHIVSGT 439
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 379 LAGSLGFLQ*PLILFDSLKEVLSALGV 299
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 203 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 75
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 454
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 326 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 448
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 403 WLSLQVDGLAGSLGF 359
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 108 YKVGDIVDIRXNGAVQKGMPHKV 176
Y VGD VD+ NG V M ++
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEI 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,554
Number of Sequences: 5004
Number of extensions: 36313
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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