Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30484.Seq
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 112 2e-25
10_08_0310 - 16669565-16669822,16670558-16670794 109 1e-24
01_06_1794 - 39919363-39920025 29 1.8
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.3
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545... 29 3.1
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 4.1
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.1
08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671... 28 5.4
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 5.4
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.4
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 27 7.2
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 9.5
08_02_0830 - 21617485-21618198 27 9.5
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 112 bits (269), Expect = 2e-25
Identities = 50/86 (58%), Positives = 62/86 (72%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHXLGVIVNKRVRGGLYR 266
TGRV+NVT +GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +2
Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RV HV+ S+C ++ R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 109 bits (263), Expect = 1e-24
Identities = 49/86 (56%), Positives = 62/86 (72%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 189 TGRVYNVTAHXLGVIVNKRVRGGLYR 266
TGRV+NVT +GV +NK+V + R
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIR 86
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/76 (43%), Positives = 49/76 (64%)
Frame = +2
Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
RII KRI++RV HV+ S+C ++F R +N++L +AKA G+ ++ KRQP PK +V
Sbjct: 83 RIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQGPKPGFMVE 142
Query: 434 GTEKPVLLAPIPYEFV 481
G + PIPY+ V
Sbjct: 143 GATLET-VTPIPYDVV 157
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 329 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 466
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 116 WRHCRHQXQWCSSKGYATQSIPWKDRSRVQRDCS 217
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>01_03_0243 +
14154122-14154190,14154373-14154415,14154491-14154552,
14155214-14155310,14157663-14157733,14158338-14158694
Length = 232
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 321 KSCLHLECLTCXTRILMRFGIILREHAC--*QSHRXHEQSRCTRD 193
++C H ECL C T ++R + RE C ++R +++ C +D
Sbjct: 176 RACSHCECLLCITHEIVRCD-LKREFFCTIWLAYRLQDEASCLQD 219
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 356 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 484
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 116 WRHCRHQXQWCSSKGYATQSIPWKDRSRVQRD 211
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>08_02_1157 +
24765719-24766544,24766569-24766637,24767031-24767180,
24767296-24768503
Length = 750
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 164 ATQSIPWKDRSRVQRDCSXSRCDCQQACSRRIIPKRI 274
+ QS+PWK+R R+ + + S A S II + I
Sbjct: 512 SAQSVPWKERLRIALEIARSLAYLHSAASVSIIHRDI 548
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 363 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 470
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 293 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 278 IRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 403
I V ++ KC +D++ E L K + GK+V + + P
Sbjct: 421 IPVWYIVGKKCEEDYIVARSAEEALAKAQEKYGKSVEIYQDP 462
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 332 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 463
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 302 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 421
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,922
Number of Sequences: 37544
Number of extensions: 259866
Number of successful extensions: 851
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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