Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30484.Seq
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      136   1e-32
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          31   0.79 
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   1.8  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      28   4.2  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    28   4.2  
SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)        28   5.6  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.6  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_7990| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   27   9.7  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  136 bits (329), Expect = 1e-32
 Identities = 60/82 (73%), Positives = 71/82 (86%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
           MTN+KGYRRGTR +F+++FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 189 TGRVYNVTAHXLGVIVNKRVRG 254
           TGRVYNVT   LGV+VNK+V+G
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKG 504


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 320 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 469
           F+KR +  +R L+E   A   +NL ++PA P K    +   EKPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 383 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 475
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 124
           G+   H G+ R+    TWNYS +  + S  +W +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNY 162



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 124
           G+   + G++R+    TWNYS +  + S  +W +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNY 120


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 23  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 124
           G+   H G+ R+    TWNYS +  + S  +W +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNY 162



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH 124
           G+   + G++R+    TWNYS +  + S  +W +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNY 120


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 266 KRINIRVXH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 382
           +RI   + H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 182 WKDRSRVQRDCSXSRCDCQQACSR--RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLL 355
           WK++  ++ +     C  Q+      + +P + + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400


>SB_37902| Best HMM Match : RPH3A_effector (HMM E-Value=7.6e-10)
          Length = 314

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +3

Query: 165 PHKVYHGKTGRV------YNVTAHXLGVIVNKRVRGGLY 263
           P KV   K GRV      YN+T    G++   ++RG +Y
Sbjct: 204 PEKVLETKFGRVEYQYLEYNITTQLAGIVNGSKLRGEMY 242


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 146 CSSKGYATQSIPWKDRSRVQRDCSXSRCDCQQ 241
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +2

Query: 305  KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEF 478
            K R + ++   + +RLL+++++  K   L++ P P  A  + +  E P+  A  P+ F
Sbjct: 1549 KARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPETPIHQAASPFVF 1604


>SB_7990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 188 DRSRVQRDCSXSRCDCQQACSRRIIPKRINIRVXHVKHSKCRQ 316
           +R++ +   S S+  C  AC RRI     N+ +  ++H + RQ
Sbjct: 194 ERNKTEFHASDSQDGCLYACVRRIWCFSTNVNLTALRHGEKRQ 236


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 284 VXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 448
           V H  ++     F+    ++++   +A+  G+ ++L  +P     AH++   EKP
Sbjct: 286 VMHKANALASGSFMATTPQSKQTKSKAQDGGRGLSLAGEPYSSHQAHLIQVFEKP 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,882
Number of Sequences: 59808
Number of extensions: 310906
Number of successful extensions: 939
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)