Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30484.Seq
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 122 1e-28
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 30 0.92
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 30 0.92
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 30 0.92
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 2.1
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 3.7
U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical p... 28 4.9
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z66523-1|CAA91411.1| 361|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z49966-3|CAA90241.1| 361|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 8.6
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 8.6
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 122 bits (295), Expect = 1e-28
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = +3
Query: 9 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 189 TGRVYNVTAHXLGVIVNKRVRGGL 260
TGR++NVT +G+IVNKRVRG +
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNI 84
Score = 84.6 bits (200), Expect = 4e-17
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Frame = +2
Query: 257 IIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH-IV 430
I+PKRINIR+ H+K SKCR DFL RVK N+ K AK+AG+ V LKR P P+ AH +
Sbjct: 84 ILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVT 143
Query: 431 SGTEKPVLLAPIPYEFVA 484
+ +P LLAP+ +E VA
Sbjct: 144 TQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 193 PVFPWYTLCGIPF*TAPLXLMSTMSPTLYTFMYVESGIVPCVRNLR 56
PVFP Y+ G+P PL +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 193 PVFPWYTLCGIPF*TAPLXLMSTMSPTLYTFMYVESGIVPCVRNLR 56
PVFP Y+ G+P PL +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 193 PVFPWYTLCGIPF*TAPLXLMSTMSPTLYTFMYVESGIVPCVRNLR 56
PVFP Y+ G+P PL +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 386 NLKRQPAPPKAAHIVSGTE 442
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 451 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 365
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 451 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 365
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>U00065-10|AAA50733.2| 382|Caenorhabditis elegans Hypothetical
protein D1044.1 protein.
Length = 382
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 167 TQSIPWKDRSRVQRDCSXSRCDCQQACS-RRIIPKRINIRVXHVKHSKCRQDFLKRVKEN 343
+ IPWK+ V D + R ++ P ++ R+ VKH+ K+N
Sbjct: 177 SDEIPWKNYENVLYDAAYIRMLHNDTLDFEKLCPAELSGRIQEVKHAFDEDGVRNSEKKN 236
Query: 344 ERL 352
E+L
Sbjct: 237 EKL 239
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2
Query: 346 LILFDSLKEVLSALGVL 296
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -2
Query: 346 LILFDSLKEVLSALGVL 296
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z66523-1|CAA91411.1| 361|Caenorhabditis elegans Hypothetical
protein M05D6.1 protein.
Length = 361
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 32 PRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQXQWCSSKGYATQSIPWKDRSRVQRD 211
PR++ + R V Y +L+VH + RH + AT ++PWK + + +
Sbjct: 183 PRNKSMFRGTV----RYCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETS 238
Query: 212 CSXSR-CDCQ--QACSRRIIPKRINIRVXHVKHSKCRQDFLKRVK 337
+ D Q + C + + +R K + F++++K
Sbjct: 239 ALKEKTTDVQLCKGCPKSFLEIATTLRKLTYKETPPYGSFMEKLK 283
>Z49966-3|CAA90241.1| 361|Caenorhabditis elegans Hypothetical
protein F35C11.3 protein.
Length = 361
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 32 PRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQXQWCSSKGYATQSIPWKDRSRVQRD 211
PR++ + R V Y +L+VH + RH + AT ++PWK + + +
Sbjct: 183 PRNKSMFRGTV----RYCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETS 238
Query: 212 CSXSR-CDCQ--QACSRRIIPKRINIRVXHVKHSKCRQDFLKRVK 337
+ D Q + C + + +R K + F++++K
Sbjct: 239 ALKEKTTDVQLCKGCPKSFLEIATTLRKLTYKETPPYGSFMEKLK 283
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 KENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLAPI 466
K+N++ K++++ T ++ PAPP+ +V EKPV AP+
Sbjct: 378 KKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--APV 420
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 260 IPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 439
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 440 EKPVLLAPIPYE 475
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 260 IPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 439
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 440 EKPVLLAPIPYE 475
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,242
Number of Sequences: 27780
Number of extensions: 215889
Number of successful extensions: 754
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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