Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30484.Seq
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60...   111   4e-25
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi...   111   4e-25
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi...   111   4e-25
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi...   111   4e-25
At1g54926.1 68414.m06272 hypothetical protein                          29   1.5  
At4g24350.1 68417.m03494 phosphorylase family protein contains P...    29   2.0  
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera...    28   3.4  
At1g04680.1 68414.m00465 pectate lyase family protein similar to...    27   6.0  

>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
           ribosomal protein L21 GI:3885884 from [Oryza sativa]
          Length = 164

 Score =  111 bits (266), Expect = 4e-25
 Identities = 49/86 (56%), Positives = 62/86 (72%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
           M    G R  TRDLFAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 189 TGRVYNVTAHXLGVIVNKRVRGGLYR 266
           TGR++NVT   +GV VNK++   + R
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIR 86



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 35/76 (46%), Positives = 50/76 (65%)
 Frame = +2

Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           RII KRI++RV HV+ S+C ++F  R K+N+ L  +AKA G+T++ KRQP  PK   +V 
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142

Query: 434 GTEKPVLLAPIPYEFV 481
           G      + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157


>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
           to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
           [Arabidopsis thaliana]
          Length = 164

 Score =  111 bits (266), Expect = 4e-25
 Identities = 49/86 (56%), Positives = 62/86 (72%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
           M    G R  TRDLFAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 189 TGRVYNVTAHXLGVIVNKRVRGGLYR 266
           TGR++NVT   +GV VNK++   + R
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIR 86



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 35/76 (46%), Positives = 50/76 (65%)
 Frame = +2

Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           RII KRI++RV HV+ S+C ++F  R K+N+ L  +AKA G+T++ KRQP  PK   +V 
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVE 142

Query: 434 GTEKPVLLAPIPYEFV 481
           G      + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157


>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
           to ribosomal protein L21 (gb|L38826). ESTs
           gb|AA395597,gb|ATTS5197 come from this gene
          Length = 164

 Score =  111 bits (266), Expect = 4e-25
 Identities = 49/86 (56%), Positives = 62/86 (72%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
           M    G R  TRDLFAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 189 TGRVYNVTAHXLGVIVNKRVRGGLYR 266
           TGR++NVT   +GV VNK++   + R
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIR 86



 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 35/76 (46%), Positives = 49/76 (64%)
 Frame = +2

Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           RII KRI++RV HV+ S+C ++F  R K+N+ L   AKA G+T++ KRQP  PK   +V 
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142

Query: 434 GTEKPVLLAPIPYEFV 481
           G      + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157


>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
           to L21 family of ribosomal protein; amino acid sequence
           is identical to F21M12.8
          Length = 164

 Score =  111 bits (266), Expect = 4e-25
 Identities = 49/86 (56%), Positives = 62/86 (72%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRXNGAVQKGMPHKVYHGK 188
           M    G R  TRDLFAR FR  G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 189 TGRVYNVTAHXLGVIVNKRVRGGLYR 266
           TGR++NVT   +GV VNK++   + R
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIR 86



 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 35/76 (46%), Positives = 49/76 (64%)
 Frame = +2

Query: 254 RIIPKRINIRVXHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           RII KRI++RV HV+ S+C ++F  R K+N+ L   AKA G+T++ KRQP  PK   +V 
Sbjct: 83  RIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVE 142

Query: 434 GTEKPVLLAPIPYEFV 481
           G      + PIPY+ V
Sbjct: 143 GMTLET-VTPIPYDVV 157


>At1g54926.1 68414.m06272 hypothetical protein
          Length = 273

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 227 CDCQQACSRRIIPKRINIRVXHVKHSK 307
           CD  + C  R+ PK  +I   H KH K
Sbjct: 59  CDLSEGCKNRMTPKAFHIISQHPKHHK 85


>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
           PF01048: Phosphorylase family
          Length = 336

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 134 DVYNVSNFVHFHVRGERNSSM 72
           DV+NV   VHF + G  N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134


>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 450

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 173 FVWHTLLNCTIASDVYNVSNFVHFHVRGERN 81
           FVW  LLN    SDV+ V   +H   R ERN
Sbjct: 369 FVWDQLLNARFVSDVWMVG--LHLEGRIERN 397


>At1g04680.1 68414.m00465 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa]
          Length = 431

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 185 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 9
           S  +F W T+      +D   +S F   HV  + NS S CA+   + V G+ A+T+   H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269

Query: 8   L 6
           L
Sbjct: 270 L 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,602,112
Number of Sequences: 28952
Number of extensions: 200464
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)