Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30483.Seq
         (667 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    28   0.30 
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    28   0.30 
AY341160-1|AAR13724.1|  159|Anopheles gambiae CED6 protein.            27   0.53 
AY341161-1|AAR13725.1|  159|Anopheles gambiae CED6 protein.            26   1.2  
AY341159-1|AAR13723.1|  159|Anopheles gambiae CED6 protein.            25   2.8  
AY341158-1|AAR13722.1|  159|Anopheles gambiae CED6 protein.            25   2.8  
AY341157-1|AAR13721.1|  159|Anopheles gambiae CED6 protein.            25   2.8  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.5  

>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 261 KCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
           KC+ F RP S   ALL+ E +   Y + F +
Sbjct: 158 KCVPFCRPFSGQTALLTPESQSANYALTFAF 188


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 VQSIGNLTEGSLLIREDRQSC 236
           ++ +G  T G ++IRED QSC
Sbjct: 849 MKDVGEKTTGPIVIREDNQSC 869


>AY341160-1|AAR13724.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 563 TGGAPADLEKLVGDAVGSNPTLEASNNIE-REQVSVHSQVVSKNFLDLSDSLXFITFGQS 387
           TG  P       GD   S+  L  SN  E R +  V   + +K   D++     +T GQ+
Sbjct: 92  TGVTPTSSIASSGDDTNSSNNLTTSNGTEDRHECFVF--ISNKLASDIT-----LTIGQA 144

Query: 386 FDVCLRNYITE 354
           FD+  R Y+++
Sbjct: 145 FDLAYRRYVSD 155


>AY341161-1|AAR13725.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 563 TGGAPADLEKLVGDAVGSNPTLEASNNIE-REQVSVHSQVVSKNFLDLSDSLXFITFGQS 387
           TG  P       GD   S+     SN  E R +  V   + +K   D++     +T GQ+
Sbjct: 92  TGATPTSSIASSGDDTNSSNNSTTSNGTEDRHECFVF--ISNKLASDIT-----LTIGQA 144

Query: 386 FDVCLRNYITE 354
           FD+  R Y+++
Sbjct: 145 FDLAYRRYVSD 155


>AY341159-1|AAR13723.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 563 TGGAPADLEKLVGDAVGSNPTLEASNNIE-REQVSVHSQVVSKNFLDLSDSLXFITFGQS 387
           TG  P       GD   S+     SN  E R +  V   + +K   D++     +T GQ+
Sbjct: 92  TGVTPTSSIASSGDDTNSSNNSTTSNGTEDRHECFVF--ISNKLASDIT-----LTIGQA 144

Query: 386 FDVCLRNYITE 354
           FD+  R Y+++
Sbjct: 145 FDLAYRRYVSD 155


>AY341158-1|AAR13722.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 563 TGGAPADLEKLVGDAVGSNPTLEASNNIE-REQVSVHSQVVSKNFLDLSDSLXFITFGQS 387
           TG  P       GD   S+     SN  E R +  V   + +K   D++     +T GQ+
Sbjct: 92  TGVTPTSSIASSGDDTNSSNNSTTSNGTEDRHECFVF--ISNKLASDIT-----LTIGQA 144

Query: 386 FDVCLRNYITE 354
           FD+  R Y+++
Sbjct: 145 FDLAYRRYVSD 155


>AY341157-1|AAR13721.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 563 TGGAPADLEKLVGDAVGSNPTLEASNNIE-REQVSVHSQVVSKNFLDLSDSLXFITFGQS 387
           TG  P       GD   S+     SN  E R +  V   + +K   D++     +T GQ+
Sbjct: 92  TGVTPTSSIASSGDDTNSSNNSTTSNGTEDRHECFVF--ISNKLASDIT-----LTIGQA 144

Query: 386 FDVCLRNYITE 354
           FD+  R Y+++
Sbjct: 145 FDLAYRRYVSD 155


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 370 ETTLLKYIK*TPYLGSLSSRDNRAMFSD 287
           +TTL+ Y     Y+GSL    N  + SD
Sbjct: 836 QTTLMSYSSNNDYIGSLVQVKNALVSSD 863


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,048
Number of Sequences: 2352
Number of extensions: 12282
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)