Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30480.Seq
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 54 9e-08
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 43 3e-04
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 34 0.13
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 4.8
11_01_0433 - 3323372-3324616,3324708-3324905 28 6.4
10_08_0688 - 19907799-19907978,19908077-19908280,19908387-199087... 28 6.4
06_03_0106 + 16702019-16702600 28 6.4
02_05_0464 - 29256887-29257765,29258455-29258538 28 6.4
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 8.5
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 8.5
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/81 (30%), Positives = 43/81 (53%)
Frame = +1
Query: 256 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTP 435
TG V+ S++IH++YSRE + P+H+T+DT G ++AY+ L + + F
Sbjct: 103 TGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQE 162
Query: 436 VDVTLTCYEPEIVGLQVCQXT 498
+ + L E VG + + T
Sbjct: 163 IPLDLRMLEAGKVGFDILKST 183
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 TLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSXSIXGWW 253
TLLG+ G V V N + VPH E DQV ++ Y ++Y + +VN I GW+
Sbjct: 46 TLLGSVLPDGTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIVGWF 101
Score = 34.3 bits (75), Expect = 0.097
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRNADSHRVIGHLIG 99
S +V VV+F I D+Y RR + RVIG L+G
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLG 49
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 LSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSXSIXGWW 253
++ LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + GW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 92 LLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNS 229
LLGTS +G V+VTN + VP +E + NY ++ + +R+N+
Sbjct: 46 LLGTSSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINA 94
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGHLIG 99
V VHP+VL IVD Y R D+ RV+G L+G
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLG 48
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 419 PCFPFGTPNGTXTYARKPIRPPASEVSRVTWTG 321
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 128
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>10_08_0688 -
19907799-19907978,19908077-19908280,19908387-19908722,
19908815-19909102,19909196-19909411,19910985-19911311
Length = 516
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 247 LVGTGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVP 393
+VGT H +H+YY+ CRE H T GR + Y C P
Sbjct: 49 VVGTVFHQLYHVRRLHDYYTALCRE--HTTFRLLATPGRRNI--YTCDP 93
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -3
Query: 563 HHLRQVXAAAATPLDPRTSPDTVXWHTCRPTISGS*HVRVTSTGVNMQPCFPFGTPNGTX 384
HHLR+V + ++P +P+T+ HT P +R T + P F + G
Sbjct: 92 HHLRRVISPPSSPDCMPETPETLL-HTLTPANPPEFLLRGTLAACHRAPPF-YMAAGGFG 149
Query: 383 TYARKPIRPPASEVSRVTWTG 321
+ P+ P R+ TG
Sbjct: 150 ESSASPLAPSLPNPRRIIKTG 170
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 566 RHHLRQVXAAAATPLDPRTSPDTVXWHTCRPTISGS 459
+HHL AAAT DP S W P +GS
Sbjct: 164 QHHLAPPPPAAATAADPLCSLGLFDWKQYDPVFAGS 199
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 128
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 99 ARATKEWWK*PTASACHTKN-MPIKSK 176
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,314,901
Number of Sequences: 37544
Number of extensions: 390351
Number of successful extensions: 879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -