Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30480.Seq
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.17 
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             28   8.6  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 23  LFYFKLWTHTNVEMQILTELSATLLGTSDKGVVEVTNCFCVP-HKEHADQVEAELNYAMD 199
           L   K+  H   E      +   LLG      +E+TNCF  P +K   D+ + ++NY M+
Sbjct: 23  LTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQME 82

Query: 200 VYELNRRVNSSXSIXGWW 253
           V    R VN      GW+
Sbjct: 83  VMRRLRAVNIDHLHVGWY 100


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 385 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQXT 498
           CV +GVP   +G MF+ +   +    PE VG+ V Q T
Sbjct: 27  CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRT 64


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +2

Query: 92  LLGTSDKGVVEVTNCFCVPHKE-HADQVE--AELNYAMDVYELNRRVN 226
           LLG+  KGV++V NCF VP  E   DQ     + +Y  ++Y + ++VN
Sbjct: 41  LLGSRRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMYAMFKKVN 88



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYER--RNADSHRVIGHLIGHERQ 111
           +V VHP+VL  +VD + R  +     RV+G L+G  R+
Sbjct: 10  TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRK 47


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 324 CPCYSGHFAGWRSNGFTCIC 383
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 324 CPCYSGHFAGWRSNGFTCIC 383
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRF 71
           C G + CFI    R R  KCRF
Sbjct: 78  CRGSNDCFIDKVHRNRCQKCRF 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,612,089
Number of Sequences: 59808
Number of extensions: 439888
Number of successful extensions: 1467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)