Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30480.Seq
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 32 0.35
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.35
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.9
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 29 3.3
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 29 3.3
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 29 3.3
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 29 3.3
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 29 3.3
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 89 TLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSXSIXGWW 253
TL+G +KG ++VTNCF +P E D +E + + + ++ + + GW+
Sbjct: 40 TLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWF 94
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 539 AAATPLDPRTSPDTVXWHTCRPTISGS*HVRVTSTGVNMQ--PCFPFGTPNGTXTYARKP 366
A P P T+P T PT + S T+T Q P P T T T +P
Sbjct: 665 APVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRP 724
Query: 365 IRPPASE 345
+ PAS+
Sbjct: 725 VTQPASQ 731
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 539 AAATPLDPRTSPDTVXWHTCRPTISGS*HVRVTSTGVNMQ--PCFPFGTPNGTXTYARKP 366
A P P T+P T PT + S T+T Q P P T T T +P
Sbjct: 721 APVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRP 780
Query: 365 IRPPASE 345
+ PAS+
Sbjct: 781 VTQPASQ 787
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 539 AAATPLDPRTSPDTVXWHTCRPTISGS*HVRVTSTGVNMQ--PCFPFGTPNGTXTYARKP 366
A P P T+P T PT + S T+T Q P P T T T +P
Sbjct: 544 APVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRP 603
Query: 365 IRPPASE 345
+ PAS+
Sbjct: 604 VTQPASQ 610
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 132 TASACHTKNMPIKSKRNLITRWMFTS 209
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 96 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLXVXLVGGD 257
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 96 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLXVXLVGGD 257
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 96 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLXVXLVGGD 257
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 644
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 96 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLXVXLVGGD 257
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYER--RNADSHRVIGHLIG 99
V VHP+VL +VD + R + RV+G L+G
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLG 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,574,216
Number of Sequences: 27780
Number of extensions: 314098
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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