Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30480.Seq
(715 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 0.71
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 23 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 8.8
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 8.8
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 25.0 bits (52), Expect = 0.71
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 369 FTCICXCTIGSAKWKARLHVHSCRCHSHM 455
+ CI +GSA+ ARL+V+ HM
Sbjct: 469 YKCIAASKVGSAEHSARLNVYGLPFIRHM 497
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +3
Query: 390 TIGSAKWKARLHVHSCRCH 446
++G+ K R H C+CH
Sbjct: 28 SLGALKMHIRTHTLPCKCH 46
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 98 NQILTTNAWLKLEWV 112
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWV 370
+ +L T WL++EWV
Sbjct: 98 NQILTTNAWLKLEWV 112
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 326 SMLLWTLRWLEVEWVYVHM 382
+ LL T WL++EW V+M
Sbjct: 67 NQLLITNLWLKLEWNDVNM 85
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 615 RGKGSXPPGSNRGXXR 662
RG+GS GSN G R
Sbjct: 309 RGRGSVHNGSNNGSPR 324
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,065
Number of Sequences: 438
Number of extensions: 4042
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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