Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30480.Seq
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 65 5e-11
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 44 8e-05
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 43 2e-04
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 43 2e-04
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 1.3
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 1.3
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 29 2.3
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 29 2.3
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 29 2.3
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 28 7.1
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 28 7.1
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 64.9 bits (151), Expect = 5e-11
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLLLRATQRTCRSSRSG 180
++ ++HP+V+F + D + RR + RVIG L+G G + A S +
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILP-DGTVDIRNSYAVPHNESSDQVA 84
Query: 181 T*L--RDGCLRAEQKSQFL*XYXWLVGTGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 354
+ L + K TG V SS+IH++Y+RE P+H+T+DT
Sbjct: 85 VDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFT 144
Query: 355 GGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQXT 498
G ++A+V L + + + F + V L + E VG V + T
Sbjct: 145 NGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKAT 192
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 TLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSXSIXGWW 253
TLLG+ G V++ N + VPH E +DQV +++Y ++ + +VNS +I GW+
Sbjct: 55 TLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWY 110
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 TELSATLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSXSIXGW 250
T ++ LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + GW
Sbjct: 45 TLVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGW 104
Query: 251 W 253
+
Sbjct: 105 Y 105
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 92 LLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNSSXSIXGWWGLA 262
LLG+S +GVV+VTN + VP +E + NY ++ + +R+N+ + GW+
Sbjct: 46 LLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTG 105
Query: 263 MK 268
K
Sbjct: 106 PK 107
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGHLIG 99
V VHP+VL IVD Y R D S RV+G L+G
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLG 48
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 92 LLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNSSXSIXGWWGLA 262
LLG+S +G V+VTN + VP +E + NY ++ + +R+N+ I GW+
Sbjct: 46 LLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTG 105
Query: 263 MK 268
K
Sbjct: 106 PK 107
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGHLIG 99
V VHP+VL IVD Y R D S RV+G L+G
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLG 48
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 119
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 223 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 119
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSXSIXGWWGLAMK*---PTTPLL--YTSIIPVNAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++PVNAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSXSIXGWWGLAMK*---PTTPLL--YTSIIPVNAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++PVNAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 167 QVEAELNYAMDVYELNRRVNSSXSIXGWWGLAMK*---PTTPLL--YTSIIPVNAVSLSM 331
Q + E+ + D+ L + + S + G K T LL YT+++PVNAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 332 LL 337
LL
Sbjct: 245 LL 246
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 281 PLLYTSIIPVNAVSLSMLLWTLRWLEVEWVYVHM 382
P+L ++ NA+ L+ + TL+W V WV+V +
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFVEL 367
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 87 PPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRW 197
PP+W T+ WW A+A P + +L W
Sbjct: 217 PPWWPNGTELWWGEQGAAAFEHGPPPYRKPHDLRKAW 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,100
Number of Sequences: 28952
Number of extensions: 287379
Number of successful extensions: 648
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -