Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30477.Seq
(696 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 200 3e-50
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 192 9e-48
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 178 1e-43
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 146 3e-34
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 130 4e-29
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 107 3e-22
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 105 1e-21
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 87 3e-16
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 82 1e-14
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 79 1e-13
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 70 6e-11
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 69 1e-10
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 58 3e-07
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 56 8e-07
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 53 8e-06
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 47 4e-04
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 46 0.001
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 42 0.019
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 41 0.025
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 41 0.033
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 40 0.044
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 40 0.077
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 36 0.72
UniRef50_Q1Q3S6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_Q0DJR6 Cluster: Os05g0237700 protein; n=9; Oryza sativa... 34 2.9
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 34 3.8
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 34 3.8
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 33 5.1
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 33 6.7
UniRef50_Q8S5P9 Cluster: Putative uncharacterized protein OSJNBb... 33 6.7
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 8.8
UniRef50_Q2IIU4 Cluster: Putative uncharacterized protein; n=1; ... 33 8.8
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.8
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 33 8.8
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 200 bits (487), Expect = 3e-50
Identities = 112/216 (51%), Positives = 142/216 (65%), Gaps = 7/216 (3%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVCWA 549
ESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG A
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLA 173
Query: 550 CVASRPGQCGRADGLHLRXAKKLEFYLRXVKF*EGE 657
C+ASRPGQCGRADG ++ K+LEFYLR +K +G+
Sbjct: 174 CIASRPGQCGRADG-YVLEGKELEFYLRKIKARKGK 208
Score = 112 bits (270), Expect = 7e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 192 bits (467), Expect = 9e-48
Identities = 108/210 (51%), Positives = 136/210 (64%), Gaps = 1/210 (0%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + RP+AN
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANT-------------KIG 39
Query: 211 GHR*LLLGI-GMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 387
R + + G +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 40 PRRIHTVRVRGGCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 99
Query: 388 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVCWACVASRP 567
PLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG AC+ASRP
Sbjct: 100 PLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRP 159
Query: 568 GQCGRADGLHLRXAKKLEFYLRXVKF*EGE 657
GQCGRADG ++ K+LEFYLR +K +G+
Sbjct: 160 GQCGRADG-YVLEGKELEFYLRKIKARKGK 188
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 193
GKR P KKRKYELGRPAANT++GP+RIH+VR RGG T+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 178 bits (433), Expect = 1e-43
Identities = 107/214 (50%), Positives = 133/214 (62%), Gaps = 10/214 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANP-LRSFTWWKY*VPCAA 207
MGISRD HKRRATG + + +R R RP+AN L S K
Sbjct: 1 MGISRDSAHKRRATGGKRKS--------LRKKRKFELGRPAANTKLGSGRVHKVRTRGGN 52
Query: 208 SGHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQW 366
+ R L L G F +TRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQW
Sbjct: 53 TKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQW 112
Query: 367 YESHYTLPLGRKKGAKLTEAEEA--IINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGV 540
YE+HY LPLGRK+ K + E+ ++ KKRS+K +KYL RQ+ KVE + T G
Sbjct: 113 YEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGR 172
Query: 541 CWACVASRPGQCGRADGLHLRXAKKLEFYLRXVK 642
AC++SRPGQCGR+DG ++ K+LEFYL+ +K
Sbjct: 173 ILACISSRPGQCGRSDG-YILEGKELEFYLKKIK 205
Score = 96.7 bits (230), Expect = 5e-19
Identities = 43/60 (71%), Positives = 50/60 (83%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL+TGNF+W SE RK
Sbjct: 16 GKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARK 75
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 146 bits (355), Expect = 3e-34
Identities = 83/156 (53%), Positives = 102/156 (65%), Gaps = 7/156 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + + + A P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54 KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 477
ESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Score = 112 bits (270), Expect = 7e-24
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 130 bits (313), Expect = 4e-29
Identities = 90/224 (40%), Positives = 124/224 (55%), Gaps = 15/224 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD HKRRATG + A ++ + R + S+N T + V
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKY--ELGRQPANTKLSSNK----TVRRVRVRGGNV 54
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
R L L G ++ +TRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY
Sbjct: 55 KWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114
Query: 370 ESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSN 525
+HY + +GRKK A+ E E A K+S RK R+ ++ +
Sbjct: 115 LTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQ 174
Query: 526 STQGVCWACVASRPGQCGRADGLHLRXAKKLEFYLRXVKF*EGE 657
G AC++SRPGQCGRADG ++ K+LEFY++ ++ +G+
Sbjct: 175 FGSGRLLACISSRPGQCGRADG-YILEGKELEFYMKKLQRKKGK 217
Score = 83.8 bits (198), Expect = 4e-15
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 254 K 256
K
Sbjct: 76 K 76
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 107 bits (256), Expect = 3e-22
Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 14/218 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*V-RASRCKHQARPSANPLRSFTWWKY*VPCAA 207
MGI R HKR+ TG +T H + + + R +P+R+ + +
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRA-RGGNFKIRALR 59
Query: 208 SGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 387
+ R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY +
Sbjct: 60 LDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGI 119
Query: 388 PL-GRKKGAKLTEAEE--------AIINK----KRSQKTARKYLARQRLAKVEVL*KSNS 528
L KK K A E A +K K S K R++ R+R +VE
Sbjct: 120 DLDADKKSTKAAVAAEKKGRKSAHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIADQL 179
Query: 529 TQGVCWACVASRPGQCGRADGLHLRXAKKLEFYLRXVK 642
+G A + SRPGQ GRADG+ L A +L+FYL+ ++
Sbjct: 180 REGRVLARITSRPGQSGRADGILLEGA-ELQFYLKRLE 216
Score = 77.4 bits (182), Expect = 3e-13
Identities = 41/78 (52%), Positives = 51/78 (65%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRLDTGNF+W SE +
Sbjct: 16 GKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDTGNFAWASEAIAHR 75
Query: 257 PVSLMLCIMHLTMNWCVQ 310
V L+ + + T N V+
Sbjct: 76 -VRLLDVVYNATSNELVR 92
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 105 bits (251), Expect = 1e-21
Identities = 84/210 (40%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD HKRR TG H ++ + RPS+N + V C
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKY--------ELGRPSSNTKLGSKLVRK-VRCRGG 51
Query: 211 G--HR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 363
R L L G F+ +TR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+
Sbjct: 52 NLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKL 111
Query: 364 WYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVC 543
W+++HY L LG K +E +A S+K A A V + G
Sbjct: 112 WFKTHYGLELG-----KSSEDPQA------SEKVA---------ALVPRTLLDQFSSGRL 151
Query: 544 WACVASRPGQCGRADGLHLRXAKKLEFYLR 633
AC++SRPGQCGR DG ++ ++L FY R
Sbjct: 152 LACISSRPGQCGRCDG-YVLEGEELNFYRR 180
Score = 88.6 bits (210), Expect = 1e-16
Identities = 40/61 (65%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
G R P+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRLD+GNFSWGS+ TR
Sbjct: 15 GGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTR 74
Query: 254 K 256
K
Sbjct: 75 K 75
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +2
Query: 80 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL++GNFSWGSE RK
Sbjct: 17 KRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLESGNFSWGSEGIARK 75
Score = 39.9 bits (89), Expect = 0.058
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 397 RKKGAKLTEAEEAIINKKRSQKTARKYLAR-QRLAKVEVL*KSNSTQGVCWACVASRPGQ 573
R + + E I K R +K AR KVE + G +A V+SRPGQ
Sbjct: 59 RLESGNFSWGSEGIARKVRVIVVEKKQAARFAAQGKVEPALEKQFEAGRLYAVVSSRPGQ 118
Query: 574 CGRADGLHLRXAKKLEFYLRXVK 642
GR DG ++ ++L FY R ++
Sbjct: 119 SGRVDG-YILEGEELAFYQRAIR 140
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 82.2 bits (194), Expect = 1e-14
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = +1
Query: 253 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 432
+TRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
Score = 73.3 bits (172), Expect = 5e-12
Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 254 KPVSLMLCIMHLTMN 298
K + +L ++++ N
Sbjct: 173 K--TRILDVVYIATN 185
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 78.6 bits (185), Expect = 1e-13
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Frame = +1
Query: 322 KNAIVVVDATPFRQWYESHYTLPLGR-----KKGAKLT--EAEEAIINKKRSQKTARKYL 480
K+AIV + PFRQW+E+ Y LG KKG +T EE + KKRS+ +K+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 481 ARQRL--AKVEVL*KSNSTQGVCWACVASRPGQCGRADGLHLRXAKKLEFYLRXVK 642
RQ L A VE K G AC++S+PGQ GRADG +L K+LEF+ + +K
Sbjct: 61 TRQALPQANVEESLKEEFVTGRLLACISSKPGQVGRADG-YLFEGKELEFFSKKLK 115
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 69.7 bits (163), Expect = 6e-11
Identities = 37/87 (42%), Positives = 50/87 (57%)
Frame = +1
Query: 397 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVCWACVASRPGQC 576
R+ + T EE ++NKKRS+KT +KY R AC+ASRPGQC
Sbjct: 64 RRAPSWYTPEEEEVLNKKRSKKTQKKYDERXXXXXXXXXXXXXXXXXXXXACIASRPGQC 123
Query: 577 GRADGLHLRXAKKLEFYLRXVKF*EGE 657
GRADG ++ K+LEFYLR +K +G+
Sbjct: 124 GRADG-YILEGKELEFYLRKIKAKKGK 149
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
GK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL+ GNFSW S+ T+
Sbjct: 16 GKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGNFSWASQSITK 74
Score = 68.5 bits (160), Expect = 1e-10
Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 39/242 (16%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGI+RD HKRRATG + + ++++ R AN R + V C
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKK--------NTMGRQPANT-RLGAIRVHDVRCRYG 51
Query: 211 --GHR*LLLGIGMFN--SQ-----TRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 363
R L L G F+ SQ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR
Sbjct: 52 IIKRRALRLENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRL 111
Query: 364 WYESHYTLPLGRKKGAKLTEA-----EEAII---NKKRSQKTARKYLARQRLA------- 498
W+ Y + K E+ E+ ++ ++ +KT + +A ++A
Sbjct: 112 WFLKFYGKDIASTDYYKSLESATFKTEKKVVVPKEEENKEKTIAQQIAETQVALMNPSKT 171
Query: 499 -------KVEVL*KSNSTQ--------GVCWACVASRPGQCGRADGLHLRXAKKLEFYLR 633
K+EVL + G AC++SRPGQ G +G ++ K+L+FY +
Sbjct: 172 MQKKYAKKLEVLKNMKFDEALLEGFQSGRVLACISSRPGQTGSVEG-YILEGKELDFYSK 230
Query: 634 XV 639
+
Sbjct: 231 KI 232
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 57.6 bits (133), Expect = 3e-07
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = +2
Query: 68 PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 247
P GK P KR+YELGR TRLG + + +RS GGN+K+ LR D N + +
Sbjct: 12 PSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKDKT 71
Query: 248 TRK 256
TRK
Sbjct: 72 TRK 74
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 56.0 bits (129), Expect = 8e-07
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Frame = +2
Query: 98 KKRKYELGRPAANTRL---------GPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECST 250
KKRKY LGR ANT+L Q+I ++R RGGN K RALRL G+F+WGS +
Sbjct: 23 KKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRRALRLSHGSFAWGSADIS 82
Query: 251 RKPVSLMLCIMHLTMNWCVQ 310
K ++ + + T N V+
Sbjct: 83 HK-ARILQVVYNSTSNELVR 101
Score = 50.0 bits (114), Expect = 5e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +1
Query: 232 GIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 360
G + + RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 77 GSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 52.8 bits (121), Expect = 8e-06
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 77 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
G +A I RKKR G ++T++G +++ VR RGGN KY+ALRLD G+F + + R
Sbjct: 15 GAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFITTGKFR 74
Query: 254 KPVSLMLCIMHLTMNWCVQ 310
L+ + H + N V+
Sbjct: 75 M-AKLLQVVYHPSSNELVR 92
Score = 43.2 bits (97), Expect = 0.006
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +1
Query: 259 RIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 360
+++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 77 KLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGS 238
G ++ RKKR + GR +NT++G + + +R RGG K RAL L GNFS+ S
Sbjct: 16 GLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSYGNFSFVS 69
Score = 44.4 bits (100), Expect = 0.003
Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 8/212 (3%)
Frame = +1
Query: 31 MGISRDHWHKRRATGW-ETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAA 207
MGI+R+ HKR++TG ++C + R +PS + K V
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGR--------QPSNTKIGRRCVVKLRVRGGG 52
Query: 208 SGHR*LLLGIGMFNS-------QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQW 366
R L L G F+ + +I+ V +N S+NELVRT TL K +IV +D
Sbjct: 53 VKTRALFLSYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLDIAKTL-- 110
Query: 367 YESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVCW 546
+ TL K+ AE+ I N K L Q L+ G
Sbjct: 111 --IYNTLIRNLNSNPKI--AEDTISN---------KILIDQILS------------GKIL 145
Query: 547 ACVASRPGQCGRADGLHLRXAKKLEFYLRXVK 642
A + SRPGQ GRADG ++ ++L+++L+ ++
Sbjct: 146 ARICSRPGQSGRADG-YILEGQELDYFLKKIQ 176
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 68 PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 247
P G+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 11 PSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPATGE 70
Query: 248 TRK 256
T+K
Sbjct: 71 TKK 73
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 41.5 bits (93), Expect = 0.019
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = +1
Query: 295 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARK 474
ELVRT+TLVKNAI+ Q Y HY L +G KK A T ++ +++ RK
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRK 78
Query: 475 YLARQRLAKVEVL*KSNSTQGVCWACVASRPG 570
RQ+ K++ + G A ++S PG
Sbjct: 79 LEKRQQDHKLDPHIEEQFGSGRLLAAISSYPG 110
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 41.1 bits (92), Expect = 0.025
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSW 232
GK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 9 GKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQW 61
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 247 NSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 357
+ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 67 SKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 40.7 bits (91), Expect = 0.033
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 68 PPAGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTK 193
P G+ P RKKRK+E+G P T +G +R + R GGN K
Sbjct: 12 PTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK 54
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 40.3 bits (90), Expect = 0.044
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 95 RKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGSECSTRK 256
RKKR++ELGR T+LG + V R+ GGNTK +T N SE +K
Sbjct: 21 RKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDASEKKIKK 75
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 39.5 bits (88), Expect = 0.077
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 68 PPAGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYR 199
P G+ RKKRK ELGR +NTR+ Q + +R+ GGN K R
Sbjct: 12 PSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVR 56
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 36.3 bits (80), Expect = 0.72
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 241 MFNSQTRIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGRKKGAKL 417
M + ++ + AS EL KTL K A+ ++D PF W + L R G L
Sbjct: 180 MTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIRMSGDLL 239
Query: 418 TEAEEAIINKKRS 456
A+E +INK+ +
Sbjct: 240 NYAQE-LINKQNT 251
>UniRef50_Q1Q3S6 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 374
Score = 34.7 bits (76), Expect = 2.2
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = -1
Query: 387 QRIMRLIPLPEWSCIYYNNCILDKGLCTHQFIVRCIIHNINDTGLRVEHSDPQEKLPVSR 208
+RI+R P+ CIY I C H ++ C+ +TGL+++ ++ + +PV
Sbjct: 284 KRILRF--QPKQLCIYLGTEIEVLKECDHNKVMECLGDLYAETGLKLQKNEREVNVPVPD 341
Query: 207 RSARYLVFPPRER 169
+ RY+ + ++
Sbjct: 342 NAYRYIFYMENQK 354
>UniRef50_Q0DJR6 Cluster: Os05g0237700 protein; n=9; Oryza
sativa|Rep: Os05g0237700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 712
Score = 34.3 bits (75), Expect = 2.9
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +2
Query: 65 GPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 244
G P G+R P R++R G AA LG + R R + A R DTG+ G+
Sbjct: 583 GLPEGRRRPRRRRRT--AGATAATAELGHTALGRFRRREAKARVAAGRGDTGDPFKGARR 640
Query: 245 STRKPVS 265
R+P +
Sbjct: 641 QRRRPTA 647
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 33.9 bits (74), Expect = 3.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 95 RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
R KRK+ELGR +G Q++ + G +K R L+ D N + T+K
Sbjct: 20 RSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKTGKTQK 73
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 33.9 bits (74), Expect = 3.8
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGN 223
G + R KRKYE+G P T L + I R+ GGN K R T N
Sbjct: 15 GLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTAN 64
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 33.5 bits (73), Expect = 5.1
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 53 GISEGPPAGKRAPIRK-KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 202
G S P+G R+ K KR E GR A TR+G + + +RG TK RA
Sbjct: 6 GSSLRKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRA 56
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 33.1 bits (72), Expect = 6.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 80 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 178
+RAP K YE R AA TRL P + ++R R
Sbjct: 272 ERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_Q8S5P9 Cluster: Putative uncharacterized protein
OSJNBb0058B20.15; n=7; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OSJNBb0058B20.15 - Oryza sativa subsp. japonica (Rice)
Length = 472
Score = 33.1 bits (72), Expect = 6.7
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 35 VLVGITGISEGPPAGKRAPIRKK-RKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 211
V GI G+SEGP G RA K LGR R G + GG A R
Sbjct: 167 VCFGIGGLSEGPEGGSRAQEEKGCAARRLGRATGRRRRGEESGRRRAEEGGREGSGAGRR 226
Query: 212 DTGNFSWGSECSTRKPV 262
+G G++ + P+
Sbjct: 227 RSGGQLEGAQAAASAPL 243
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 32.7 bits (71), Expect = 8.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 331 IVVVDATPFRQWYESHYTLPLGRKK 405
++ +D PFR+W + TLPLG K
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGEVK 46
>UniRef50_Q2IIU4 Cluster: Putative uncharacterized protein; n=1;
Anaeromyxobacter dehalogenans 2CP-C|Rep: Putative
uncharacterized protein - Anaeromyxobacter dehalogenans
(strain 2CP-C)
Length = 121
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 35 VLVGITGISEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRI-HSVR 172
VL + +S A K A IRK+ +Y GR A TRL P H +R
Sbjct: 63 VLPDVGKLSRSDAAAKAAEIRKRPEYFTGRRADGTRLAPDEYEHLIR 109
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 32.7 bits (71), Expect = 8.8
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 346 ATPFRQWYESHYTLPLGRKKGAKLTEAE 429
ATPF Q + +HY L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 32.7 bits (71), Expect = 8.8
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS-WGSECSTR 253
G+R P+R +RKYE+ R G Q + + RG TK +D N + G++
Sbjct: 16 GRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLAVQGAKVKKS 75
Query: 254 KPVSLM 271
K V ++
Sbjct: 76 KIVKVL 81
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,892,085
Number of Sequences: 1657284
Number of extensions: 13532812
Number of successful extensions: 39515
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 38026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39480
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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