Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30477.Seq
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   159   2e-39

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  159 bits (386), Expect = 2e-39
 Identities = 94/206 (45%), Positives = 122/206 (59%), Gaps = 2/206 (0%)
 Frame = +1

Query: 31  MGISRDHWHKRRATG-WETCAHTQEE-EV*VRASRCKHQARPSANPLRSFTWWKY*VPCA 204
           MGISRD WHKR  TG  +   H + + E+   A+  K  A             KY     
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 205 ASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 384
            SG+            +TRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY 
Sbjct: 61  DSGN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYA 118

Query: 385 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQGVCWACVASR 564
           LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+ L       G   A ++S 
Sbjct: 119 LPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSS 178

Query: 565 PGQCGRADGLHLRXAKKLEFYLRXVK 642
           PGQ G+A+G ++   K+L+FYLR ++
Sbjct: 179 PGQVGQANG-YILEGKELDFYLRKIR 203



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 41/61 (67%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
 Frame = +2

Query: 77  GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253
           G   P+  KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74

Query: 254 K 256
           K
Sbjct: 75  K 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,261
Number of Sequences: 27780
Number of extensions: 315583
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)