Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30477.Seq
(696 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 207 7e-56
DQ855485-1|ABH88172.1| 128|Apis mellifera chemosensory protein ... 24 1.6
AJ973400-1|CAJ01447.1| 128|Apis mellifera hypothetical protein ... 24 1.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.7
DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein ... 22 4.8
AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein ... 22 4.8
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 22 6.4
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 22 6.4
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 22 6.4
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 21 8.5
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 21 8.5
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 21 8.5
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 21 8.5
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 207 bits (506), Expect = 7e-56
Identities = 119/215 (55%), Positives = 138/215 (64%), Gaps = 11/215 (5%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSAN----PLRSFTWWKY*VP 198
MGISRDHWHKRRATG + +R R RP+AN P R T
Sbjct: 1 MGISRDHWHKRRATGGKRKP--------IRKKRKFELGRPAANTKLGPQRIHT---VRTR 49
Query: 199 CAASGHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 357
+R L L G F+ +TRIIDVVYNASNNELVRTKTLVKNAIV +DATPF
Sbjct: 50 GGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPF 109
Query: 358 RQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEVL*KSNSTQG 537
RQWYE HY LPLGRK+GAKLTEAEE ++NKKRS+K KY ARQR AKVE + G
Sbjct: 110 RQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATG 169
Query: 538 VCWACVASRPGQCGRADGLHLRXAKKLEFYLRXVK 642
AC++SRPGQCGR DG ++ K+LEFY+R +K
Sbjct: 170 RVLACISSRPGQCGREDG-YILEGKELEFYMRRIK 203
Score = 121 bits (292), Expect = 6e-30
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +2
Query: 77 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
GKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGNFSWGSEC+TRK
Sbjct: 16 GKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRK 75
>DQ855485-1|ABH88172.1| 128|Apis mellifera chemosensory protein 4
protein.
Length = 128
Score = 23.8 bits (49), Expect = 1.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 339 YNNCILDKGLCT 304
Y NC+LD+G CT
Sbjct: 46 YVNCLLDQGPCT 57
>AJ973400-1|CAJ01447.1| 128|Apis mellifera hypothetical protein
protein.
Length = 128
Score = 23.8 bits (49), Expect = 1.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 339 YNNCILDKGLCT 304
Y NC+LD+G CT
Sbjct: 46 YVNCLLDQGPCT 57
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 552 ASPANALCGIALLEHLNLSK 493
A P N+LC + L+ LNL++
Sbjct: 161 ALPVNSLCSLDNLQTLNLTE 180
>DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein 6
protein.
Length = 125
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 339 YNNCILDKGLCTHQ 298
Y C+LD+G CT++
Sbjct: 43 YIKCMLDEGPCTNE 56
>AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein
protein.
Length = 125
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 339 YNNCILDKGLCTHQ 298
Y C+LD+G CT++
Sbjct: 43 YIKCMLDEGPCTNE 56
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 372 LIPLPEWSCIYYNNC 328
L P P+WS Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,585
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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