Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30475.Seq
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.8  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 22/92 (23%), Positives = 35/92 (38%)
 Frame = -3

Query: 766 NSNSLXTIERMTAVATPTISFNFAPSCLRQPPDVIIARQXXXXXXXXXX*IGSPSQCITV 587
           +S ++ T     +  TPT S N + SC+  P                    GS      +
Sbjct: 9   DSTTMATSSNAMSPMTPTYSMN-SMSCVSMPS---------MNCSPQGASFGSSMLNSGM 58

Query: 586 SGATMQNGDGSVSTTLNSTARMPPRT*RCRHD 491
            G    NG+G  S+++  T    P + R RH+
Sbjct: 59  PGGMAMNGNGMTSSSMGYTTIGSPISNRIRHE 90


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 507 QVRGGMRAVEFKVVETDPSPFCIVAPD 587
           ++RG  R   +KV E  PSP   V+P+
Sbjct: 100 EIRGPKRKT-WKVEEDSPSPTSSVSPE 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,957
Number of Sequences: 336
Number of extensions: 4212
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)