Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30475.Seq
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 120 2e-27
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 115 4e-26
08_02_0657 - 19749835-19751942,19753123-19753561 94 1e-19
06_01_0057 - 483710-484309 29 3.1
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 28 7.2
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 28 7.2
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 28 9.5
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 120 bits (288), Expect = 2e-27
Identities = 54/99 (54%), Positives = 67/99 (67%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRG 163
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
Score = 71.3 bits (167), Expect = 8e-13
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS-GGCRK 686
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPI R + GG RK
Sbjct: 161 VRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPI---KREDEERLDEVGYDDVGGVRK 217
Query: 687 QLGAKLKEMV 716
Q+ A+++E+V
Sbjct: 218 QM-AQIRELV 226
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 115 bits (277), Expect = 4e-26
Identities = 52/99 (52%), Positives = 66/99 (66%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRG 163
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
Score = 71.3 bits (167), Expect = 8e-13
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPI*T*GRRGSTKCCRAMMTS-GGCRK 686
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPI R + GG RK
Sbjct: 161 VRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPI---KREDEERLDEVGYDDVGGVRK 217
Query: 687 QLGAKLKEMV 716
Q+ A+++E+V
Sbjct: 218 QM-AQIRELV 226
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 93.9 bits (223), Expect = 1e-19
Identities = 38/88 (43%), Positives = 56/88 (63%)
Frame = +1
Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
C D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G
Sbjct: 79 CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138
Query: 436 NLFEVYLKPYFMEAYRPIHRDDTFRSAG 519
+LFE YLKPYFM+A RP+ + D F G
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRG 166
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
Frame = +2
Query: 83 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 247
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 248 ETV 256
E V
Sbjct: 76 EAV 78
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDP-SPFCIVAPDTVIHCD-GEPI*T*GRRGSTKCCRAMMTS-GGC 680
VRG M AVEFKV++T+P + IVA DT I CD G+P+ R + GG
Sbjct: 164 VRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPV---KREDEERLDGPGYDDVGGV 220
Query: 681 RKQLGAKLKEMV 716
RKQL A+++E+V
Sbjct: 221 RKQL-AQIRELV 231
>06_01_0057 - 483710-484309
Length = 199
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 YRPXSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 233
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 27 MAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 62
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 26 MAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 61
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 630 RRGSTKCCRAMMTSGGCRKQ 689
RRG +CC + +SGG R++
Sbjct: 32 RRGQVRCCSSSSSSGGARRR 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,255,009
Number of Sequences: 37544
Number of extensions: 479849
Number of successful extensions: 1215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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